Gene detail

Detail information of GWHGAAEX015139/evm.TU.scaffold_64.132

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|385809475\|ref\|YP_005845871.1\|	3.00E-38	alanine-synthesizing transaminase [Ignavibacterium album JCM 16511]
KOG	KOG0258	0	Alanine aminotransferase
nr	gi\|743807077\|ref\|XP_010927963.1\|	0	PREDICTED: glutamate--glyoxylate aminotransferase 2 [Elaeis guineensis]
Swissprot	tr\|Q9S7E9\|GGT2_ARATH	0	Glutamate--glyoxylate aminotransferase 2
trEMBL	tr\|M0TB99\|M0TB99_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P29540_001}
TAIR	AT1G70580	0	alanine-2-oxoglutarate aminotransferase 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000067	2886188	2932132	+

Transcript Sequence
>GWHTAAEX015139 CAGCGATCTTTCCTCCGTCACTCTGTTTTGAGGGAACTTCACTGTAATCTTAAGCTGTAGAGATGCCGCCTAAGCCATTGGACTATGAATTACTGAACGAGAATGTGAAGAAGATGACCTATGCAGTGAGGGGCGAGCTTTACCTGCGAGCTTCCGAGCTTCAGAAGGAAGGGAAAAAGATAATTTTTGCAGATGCTGGCAACCCACATGCTTTAGGGCAAAAGCCATTGACATTTCCTCGCCAGGTGGTAGCCCTCTGTCAAGCTCCATTTCTTCTAGATGATCCAAACGTGGAACTACTATTTCCAGCTGATGCTATTGCTAGAGCCAAATGTTACCTTTCAATGACTTCAGGTGGCCTAGGCGCATATTGTGACCCTCGAGGTCTTCCGGGTATAAGGAAAGAAGTTGCGGAGTTTATTGAGAGACGTGATGGATACCCTAGTGATCCTGAGCTTATATTTCTCACAGATGGTGCCAGCAAAGGTGTTATGCATATCCTAAATTCTATTATCAGAAATGATAAAGATGGGATATTGGTACCAGTTCCACAATATCCTCTTTATTCTGCTTCAATATCTTTATTTGGAGGTTCCCTTGTGCCATATTATTTAAAGGAAGAAGAAAACTGGAGTCTTGACTTGCAGAATGTTCGACAATCAGTAGCTGCGGCACGCTCTAAAGGGATGACTATTCGAGCTATGGTGATCATAAACCCTGGAAACCCTACTGGACAATGTCTCAGTGAAGTCAATTTAAAGGAAATTTTGTTATTTTGCTACCAAGAAAACATAGTCCTGCTTGCAGATGAAGTTTATCAGCAAAACGTATATCAGGAAGAGAGACCCTTCATAAGTGCTAGAAAGATATTATTGGGCATGGGTCCACCTATTAGCAAGGAGGTGCAACTTGTATCCTTCCACACAGTTTCAAAAGGATACTCGGGTGAATGTGGACAGCGTGGAGGCTACTTCGAGATGACTAATATTTCTTCGCAGACTGTTGATGAAATCTATAAAGTTACCTCAGTTCTACTGAGTCCTAATGTCCCTGGCCAAATTTTTTTAGGGTTAATGGTGAATCCTCCAAGGCCGGGTGATATTTCCTACTTGAAGTACACTACAGAGAGCAATTTAGTTTTGCATTCCCTGAGAAGAAGAGCTCATATAATGGCCGATGGATTTAATAGCTGCAAGAATGTAATTTGTAATTCTACAGAAGGTGCTATGTATTCTTTTCCACAAATTCGCTTGCCACCTGAGGCAATTGGAGCTGCAATGAAGGCTGGCAAGGCTCCTGATGTGTTCTATTGTCTTAAGCTGTTGGATGCTACTGGCATTTCTACAGTTCCAGGGTCAGGGTTTGGCCAGAAGGAAGGATATAGAAAACCGCACCAAGCTGGATCCAAAGTTTATAAAATACAATTTTATTGGATGGCTGAGATAAGTTTGGGTACAAGTTTTGGGACTACCAATACTTCCCAACACCACAAGAACATCAGGAGCAAGAATATTACATTTAATGAAGAGAGGTGCTCAAAGATCGGGACAGCTCAAAGCACAACGATCCAACGACATTAAATGAACACATTGAATGTTAAGAAACGAGTGAACCCAAAGAGCCGGTTGAACAAAAAGAGGAGATTTGAGTTATGGGTTAGAAAAAATGAGCAGTTTGCATGCTTTGAAATGATGTACACTAACTTGTCTATGTTAGCATGTCTACCGCATAACACTTTTGTTTCTTTCTGATGACTGAATCGTGTCTATATTTTGTCACCCTATAGTGCTTTTGTAAGTTCACTAGTTTTCTTGGGCTTTAAAGTATATGAATACCTTATTAAATTAGAAGTGCTTCTCTTCATTTTCCTTATGAACTTTTCTTGAAGCAAACGCCTCTCATTTATGTTCAATATCAAAAGCACTGACATATTTTTATAAATGGATCTTTTAGGGTTTTCCATTTTAGAGCAACCATTCTGCCATATGAGGAAGAAATGCCTGCAATAATGGCAAGCTTCAAGAAATTCAATGATGAATTCATGGAACAATATGGCAGCAACAGAGGTTATTCAAGGTTGTGATCTCAGAAAGTCAAGGAATCTCAGGCTTTCTTATGCCATAGTTTGTGCGAAAATGGGAAAGACATTGCTCATTGCATTTCCATTTATGTAATCTCTTAAATGAGTTTTAATTATTAGAATCATGTGTGTTTCCTTTGATCCTCATCATTTTTGTTAAGAAATATTCCAAATAGCCATGCTTAGTTCAGGCATAATTTTTATTTGAAACTAAATTTCTTTTATTGGCAGATCATGTTTTTTATTTGAAAGGTGAGCTTCCAATATAAATAAGAGAAATTTTTTTTAGTCCT

Network for GWHGAAEX015139

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00155.20	Aminotran_1_2	93	436	5.90E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14272	GGAT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of antibiotics	map01130
		Carbon metabolism	map01200
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Glyoxylate and dicarboxylate metabolism	map00630
		Carbon fixation in photosynthetic organisms	map00710
		Pyrimidine metabolism	map00240
		Arginine biosynthesis	map00220

Gene Ontology

GO term	Ontology	Name
GO:0009058	Biological Process	biosynthetic process
GO:0003824	Molecular Function	catalytic activity
GO:0030170	Molecular Function	pyridoxal phosphate binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	125.510
SRP064423	SRR2545915	Juvenile tuber	67.690
SRP108465	SRR5643513	five period of Gastrodia elata	37.540
	SRR5643514	five period of Gastrodia elata	41.100
	SRR5643515	five period of Gastrodia elata	39.590
	SRR5643524	five period of Gastrodia elata	40.510
	SRR5643525	five period of Gastrodia elata	31.860
	SRR5643528	five period of Gastrodia elata	40.660
	SRR5643658	five period of Gastrodia elata	35.330
	SRR5643659	five period of Gastrodia elata	27.740
	SRR5643660	five period of Gastrodia elata	23.630
	SRR5643661	five period of Gastrodia elata	26.400
	SRR5643662	five period of Gastrodia elata	27.150
	SRR5643663	five period of Gastrodia elata	28.730
	SRR5643664	five period of Gastrodia elata	22.960
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	54.280
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	32.130
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	53.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	55.570
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	63.650
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	66.040
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	55.350
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	55.420
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	67.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	74.120
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	50.750
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	50.750
SRP279888	Gastro	Gastrodia elata tuber	23.60
	Juven	Juvenile tuber	22.51
	Mother_Gastro	Mother tuber of Gastrodia elata	14.80
	Mother_Juven	Mother tuber of Juvenile	16.33