Gene detail

Detail information of GWHGAAEX015141/evm.TU.scaffold_64.134

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262195025\|ref\|YP_003266234.1\|	4.00E-61	SNF2-like protein [Haliangium ochraceum DSM 14365]
KOG	KOG0387	0	Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain)
nr	gi\|743758827\|ref\|XP_010929000.1\|	0	PREDICTED: switch 2 [Elaeis guineensis]
Swissprot	tr\|F4I2H2\|CHR9_ARATH	0	Switch 2 {ECO:0000312\|EMBL:AEE27606.1}
trEMBL	tr\|A0A068EW60\|A0A068EW60_COCNU	0	DNA repair and recombination protein {ECO:0000313\|EMBL:AID55113.1}
TAIR	AT1G03750	0	switch 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000067	2933252	2961193	-

Transcript Sequence
>GWHTAAEX015141 AACCTCCCAAAATTTGTATAGGTCGAGCATCGGCAAACGGAAACATTCTCCTTCCCGAGAAAATGTCGTTGAACCATTTCAAGGAAACACTGCTCCGCCCCTGCTCTCAGTCCGCCTCCACCAACACCAACGCTTCCTACGTACCCTCTGTATCTACATACCACGAAGTCGATGAATTCAACTCAAGAAAGCCCCCTAGATCCTCCCTTTTCCAGCAGCTCCAGCGGCTCGATTTTGCTTCCTTCTCCCCAGACGAGAGCGAAGTCCACGGTGACGTACGGCGCTTTGAACGAGAAGGAGAATTCGGAACCAGGGAAGGACAAGAAGATGAAGAAGAAGACGAAGAAGAAGATGGAGAGGAGACTGTGACCGATGGTGGCGATTCCGTAGCTTCTCAGAGGTTCAATTTAGGCCACGGAGGGCCATTTGAACCGCTAGTCCTCTCTTCTCTAGGGGAATCGCCTGTTGTTCAGGTTCCAGCATCGATTAATTGCAAACTACTTGAACATCAAAGGGAGGGTGTGAAGTTTCTGTATGGTTTGTACAAGAACAACCATGGTGGTGTCCTTGGAGATGATATGGGGCTTGGGAAAACCATTCAGTCCATAGCCTTTTTTGCTGCGGTGCTCAGAAAGGACATTGAGAACTCAGACTGTCATATGGATGACAAAAAGGGCTCTGTTTTGATTCTTTGTCCCACTTCTGTTATACGCAACTGGGAGAATGAGTTATCTGAATGGGGAAATTTTAGTGTCGCTGTTTATCATGGACCAAATCGCGATTTGATTCTTGAAAAACTATTTGCTCACACAGTAGAGATAGTTATAACTAGTTTCGATACATTTAGAAATCAAGACCAAATTCTATCTGAGATCCAGTGGGATATTGTTGTTGTTGATGAAGCACATCGTTTGAAGAATGAAAAGTCTCAGTTTTATAAGTCATGCTTAGGAATCAAAACAATGAGACGATACGGGCTTACTGGAACTATAATGCAGAACAAAATACTTGAATTATTTAATCTATTCGATTGGTTTTCGCCTGGTTCTCTAGGAACCAGAGAACACTTTCGAGAGTACTATGATGAGCCTTTAAAGCATGGACAAAGGTTAAGCGCTCCTCAAAGATTCATTCAAATTGCTGATGAGCGCAAACAACACCTTGTTAAAGTGCTGCACAAGTACTTTCTAAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGCTGGGTAAGCAAGACAACGTTGTTTTTTGTGCAATGAGTGATTTGCAAAGGCGAGTTTACAAACGGATGTTGGAGCTTCCTGAAATTCAATGCCTCGTAAATAAGGACCTCCCCTGCAGTTGTGGGAGCCCATTGACTCAAGTTGAATGCTGCAACAGAATTGTTCCCAATGGCATTATTTGGCAATATCTTCACAGGGATAATCCTGAAGGTTGCGACTCATGCCCTTTTTGTCTTGTGCTTCCTTGCCTAATTAAACTGCAGCAGATAAGCAATCACCTTGAGTTAATAAAGCCTAACACTAAGGATGATGTAGCGAAACAAAAGAAGGATGCTGATCTAGCCTCTATTGTTTTTGGTACTGATGTCGACTTGGTTGGAGGCAATGTTCAGACTGAAAGTTTCATTGGGCTTAGTGATGCAGAACATTGTGGAAAAATGCGGGCACTCGAAAAGCTTATGCTTCATTGGATCAGACATGGCGACAAGATTCTTCTCTTTAGTTATTCAGTCAGGATGCTTGACATTCTTGAGAAATTCCTTATAAGAAAGGGTTATTGCTTTTCTAGATTAGATGGTTCAACCCCAATGAGCTTGCGGCAATCATTGGTTGATGAGTTTAATAGAAGTCCAAGCAAGCAGGTATTCCTCATATCCACTCGGGCAGGCGGTTTAGGTCTCAATCTTGTTAGTGCAAATAGAGTTGTGATATTTGATCCGAATTGGAATCCCGCTCAAGACCTACAGGCACAAGATAGATCTTTCCGATATGGGCAGAAGAGGCATGTTGTTGTATTCCGCCTTCTAGCAGCTGGTTCCCTTGAAGAACTTGTGTATTCTAGGCAGGTTTATAAGCAACAACTTTCAAATATTGCTGTTTCAGGAAAAGCAGAAAAGCGCTATTTTGAGGGTGTTCAGGACTGCAAAGAATTCAAAGGTGAGCTTTTTGGAATCTGCAACCTGTTTCGTGACCTATCTGATAAGCTTTTTACAAGTGAGATCATTGAACTGCACGCAAAGCATGGAAAAAATTATGATGCTTCCGGTGACTCAGAAGATGTTATGGGAAACGAGAAAAATCTGGTAACAAAGATCTCATTAGCAATTCTGAAGGTCGATGATGCATCTTTGAATGATAAAGCAAATCATAATTCATGCTCCGAAAAATATGCTGAAGGTTTTACCGTTGAAAATGAACAATCACTTAATGACTTGGGAATACTTTATGCTCATCGAAACGAAGACGTTGTCAATATGAAGCCCCAAAATCGGAGCAAGCTGGAATCGGTCACTGAAGATGCAAGCACTGTTTCAAAAATCTTGTGCAGACCAGACATTGCTTTGAAATCCTACAGCAATAGAGAAGAGAAAAGGAATAAGTTTATAAAAATTGCTCAGTATAAATGCATGGAGCTCTTTGATTTCAGCAACTGGATACTATCAGCCTCACCTGCTGAGCTGGAGCAACTGCTCAAGAACTATTATCATAAGAACAAGAGGAAGAGGGCATAATGGTAAACACTAAAGCAGTTCCGAATTTGCTCCATTTGGTATTTGGCACTCTTCCATCACCGTCGGCGAAGTTCAAAATCCACTTCGAGGCATTCCGAGCTGCCTATATATTATCATTTTATGGAATTATTACTCACAAAATGCTCAAATTTAAGTATTTATATATCTAACACCTTAACTTTGATGATTTGTACCAAATTATATCACTTGAATGAAGTGTGGTGTTAGATGTGTTAAATACAAGAATTTTGGTGCTATGTGACACTCTTTTTCTTTTGCATCAAATGCCTGAGAATTGAAGCACATTTTTTGTATGATGTATAGCAGATATATGTTTATATAAAAATGCAAAATAAATGAATAAATGCTCCATAAAATATGG

Network for GWHGAAEX015141

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.22	SNF2_N	160	415	3.80E-50
PF00271.30	Helicase_C	534	646	1.70E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.440
SRP064423	SRR2545915	Juvenile tuber	12.720
SRP108465	SRR5643513	five period of Gastrodia elata	9.570
	SRR5643514	five period of Gastrodia elata	11.040
	SRR5643515	five period of Gastrodia elata	9.130
	SRR5643524	five period of Gastrodia elata	10.800
	SRR5643525	five period of Gastrodia elata	9.370
	SRR5643528	five period of Gastrodia elata	11.440
	SRR5643658	five period of Gastrodia elata	10.680
	SRR5643659	five period of Gastrodia elata	7.900
	SRR5643660	five period of Gastrodia elata	9.880
	SRR5643661	five period of Gastrodia elata	8.800
	SRR5643662	five period of Gastrodia elata	8.430
	SRR5643663	five period of Gastrodia elata	8.620
	SRR5643664	five period of Gastrodia elata	8.570
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.930
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.890
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.020
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.650
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.470
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.410
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.510
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.850
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.070
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.890
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.890
SRP279888	Gastro	Gastrodia elata tuber	10.74
	Juven	Juvenile tuber	12.37
	Mother_Gastro	Mother tuber of Gastrodia elata	16.26
	Mother_Juven	Mother tuber of Juvenile	13.57