Detail information of GWHGAAEX015144/evm.TU.scaffold_64.138
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 6.00E-152 | FOG: PPR repeat |
| nr | gi|672172066|ref|XP_008806115.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g30700-like [Phoenix dactylifera] |
| Swissprot | tr|Q9SZT8|PP354_ARATH | 2.00E-152 | Pentatricopeptide repeat-containing protein ELI1, chloroplastic {ECO:0000305} (Precursor) |
| trEMBL | tr|K4CR36|K4CR36_SOLLC | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc09g010070.1.1} |
| TAIR | AT4G37380 | 6.00E-152 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000067 | 3035257 | 3037125 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015144
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 114 | 144 | 0.0045 |
| PF01535.19 | PPR | 189 | 213 | 0.03 |
| PF01535.19 | PPR | 215 | 244 | 1.10E-09 |
| PF13041.5 | PPR_2 | 314 | 361 | 1.30E-10 |
| PF01535.19 | PPR | 389 | 415 | 0.00043 |
| PF14432.5 | DYW_deaminase | 489 | 611 | 5.30E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.800 |
| SRR2545915 | Juvenile tuber | 2.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.060 |
| SRR5643514 | five period of Gastrodia elata | 3.620 | |
| SRR5643515 | five period of Gastrodia elata | 4.040 | |
| SRR5643524 | five period of Gastrodia elata | 2.820 | |
| SRR5643525 | five period of Gastrodia elata | 3.230 | |
| SRR5643528 | five period of Gastrodia elata | 1.200 | |
| SRR5643658 | five period of Gastrodia elata | 1.070 | |
| SRR5643659 | five period of Gastrodia elata | 5.780 | |
| SRR5643660 | five period of Gastrodia elata | 5.870 | |
| SRR5643661 | five period of Gastrodia elata | 6.950 | |
| SRR5643662 | five period of Gastrodia elata | 6.270 | |
| SRR5643663 | five period of Gastrodia elata | 4.810 | |
| SRR5643664 | five period of Gastrodia elata | 5.410 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.130 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.960 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.880 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.550 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.360 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.340 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.380 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.940 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.43 |
| Juven | Juvenile tuber | 5.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.73 | |
| Mother_Juven | Mother tuber of Juvenile | 2.67 |