Detail information of GWHGAAEX015152/evm.TU.scaffold_64.146
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383456168|ref|YP_005370157.1| | 2.00E-109 | 3-hydroxybutyryl-CoA dehydrogenase [Corallococcus coralloides DSM 2259] |
| KOG | KOG2304 | 2.00E-146 | 3-hydroxyacyl-CoA dehydrogenase |
| nr | gi|672180708|ref|XP_008810553.1| | 2.53E-165 | PREDICTED: probable 3-hydroxyacyl-CoA dehydrogenase F54C8.1 [Phoenix dactylifera] |
| Swissprot | tr|O49809|MFPA_BRANA | 1.00E-37 | 3-hydroxyacyl-CoA dehydrogenase |
| trEMBL | tr|A5BDL6|A5BDL6_VITVI | 2.00E-154 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN67802.1} |
| TAIR | AT3G15290 | 2.00E-146 | 3-hydroxyacyl-CoA dehydrogenase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000067 | 3128495 | 3156114 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015152
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02737.17 | 3HCDH_N | 8 | 185 | 1.60E-60 |
| PF00725.21 | 3HCDH | 188 | 284 | 8.80E-33 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006631 | Biological Process | fatty acid metabolic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0070403 | Molecular Function | NAD+ binding |
| GO:0003857 | Molecular Function | 3-hydroxyacyl-CoA dehydrogenase activity |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.650 |
| SRR2545915 | Juvenile tuber | 22.910 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.680 |
| SRR5643514 | five period of Gastrodia elata | 33.220 | |
| SRR5643515 | five period of Gastrodia elata | 28.030 | |
| SRR5643524 | five period of Gastrodia elata | 31.190 | |
| SRR5643525 | five period of Gastrodia elata | 21.720 | |
| SRR5643528 | five period of Gastrodia elata | 42.340 | |
| SRR5643658 | five period of Gastrodia elata | 34.030 | |
| SRR5643659 | five period of Gastrodia elata | 22.870 | |
| SRR5643660 | five period of Gastrodia elata | 20.250 | |
| SRR5643661 | five period of Gastrodia elata | 28.540 | |
| SRR5643662 | five period of Gastrodia elata | 15.770 | |
| SRR5643663 | five period of Gastrodia elata | 20.130 | |
| SRR5643664 | five period of Gastrodia elata | 16.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 30.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 36.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 34.190 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 30.380 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 42.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 40.310 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 40.020 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 38.590 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 52.450 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 51.190 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 43.550 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 43.550 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 27.64 |
| Juven | Juvenile tuber | 17.20 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 34.65 | |
| Mother_Juven | Mother tuber of Juvenile | 22.73 |