Detail information of GWHGAAEX015154/evm.TU.scaffold_64.150
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|291288389|ref|YP_003505205.1| | 3.00E-92 | diaminopimelate decarboxylase [Denitrovibrio acetiphilus DSM 12809] |
| KOG | KOG0622 | 0 | Ornithine decarboxylase |
| nr | gi|743815093|ref|XP_010930238.1| | 0 | PREDICTED: probable diaminopimelate decarboxylase, chloroplastic [Elaeis guineensis] |
| Swissprot | tr|Q94A94|DCDA2_ARATH | 0 | Diaminopimelate decarboxylase 2, chloroplastic (Precursor) |
| trEMBL | tr|F6I0M3|F6I0M3_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB60489.1} |
| TAIR | AT3G14390 | 0 | Pyridoxal-dependent decarboxylase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000067 | 3236663 | 3264291 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015154
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02784.15 | Orn_Arg_deC_N | 106 | 353 | 4.30E-52 |
| PF00278.21 | Orn_DAP_Arg_deC | 191 | 444 | 4.10E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009089 | Biological Process | lysine biosynthetic process via diaminopimelate |
| GO:0008836 | Molecular Function | diaminopimelate decarboxylase activity |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.660 |
| SRR2545915 | Juvenile tuber | 27.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 38.300 |
| SRR5643514 | five period of Gastrodia elata | 46.600 | |
| SRR5643515 | five period of Gastrodia elata | 38.690 | |
| SRR5643524 | five period of Gastrodia elata | 41.290 | |
| SRR5643525 | five period of Gastrodia elata | 17.250 | |
| SRR5643528 | five period of Gastrodia elata | 15.870 | |
| SRR5643658 | five period of Gastrodia elata | 12.630 | |
| SRR5643659 | five period of Gastrodia elata | 27.300 | |
| SRR5643660 | five period of Gastrodia elata | 26.090 | |
| SRR5643661 | five period of Gastrodia elata | 28.800 | |
| SRR5643662 | five period of Gastrodia elata | 24.110 | |
| SRR5643663 | five period of Gastrodia elata | 26.730 | |
| SRR5643664 | five period of Gastrodia elata | 22.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 46.480 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 49.710 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 44.630 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 37.790 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 38.340 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 33.150 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 46.670 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 38.650 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 56.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 50.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 53.160 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 53.160 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 31.47 |
| Juven | Juvenile tuber | 32.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.56 | |
| Mother_Juven | Mother tuber of Juvenile | 18.17 |