Gene detail

Detail information of GWHGAAEX015159/evm.TU.scaffold_64.155

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0048	1.00E-70	Transcription factor, Myb superfamily
nr	gi\|720064986\|ref\|XP_010276128.1\|	2.95E-80	PREDICTED: myb-related protein B-like [Nelumbo nucifera]
Swissprot	tr\|Q0JIC2\|GAM1_ORYSJ	4.00E-68	Transcription factor GAMYB
trEMBL	tr\|M0SRI0\|M0SRI0_MUSAM	2.00E-75	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P23690_001}
TAIR	AT2G32460	1.00E-70	myb domain protein 101

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000067	3414762	3416809	+

Transcript Sequence
>GWHTAAEX015159 ATGAGGGCGCCTGCGATTGTGAAGGGGGAGCGCGAGGAGGATTCTGCTGCAGTTACCGACGCCGACAATTCAGTCGCCGGCGGCGTATCCATCGCCGGCGGCGTATCCATCGCCGGCGGCGTATCCATCGCCGGCGGCGTATCCATCGCCGGCGCTACCTCCGGCCAGCAGCTTCTGAAGAAAGGTCCATGGACGGCGGCGGAGGATGCTATTCTGATGGAGTACGTGAAGAAGCACGGAGAAGGTAATTGGAACGCAGTGCAGAAGAACAGCGGGCTTCAACGCTGCGGGAAGAGCTGCCGGCTTCGATGGGCGAATCATCTCCGTCCCAATCTGAAAAAAGGATCGTTCTCTCCCGAAGAGGAGATGCTCATACTTCAGCTCCACGCCGAGTACGGCAACAAATGGGCTCGGATGGCCGCACACTTACCGGGGAGAACGGACAACGAGATCAAGAACTACTGGAACACCAGGATTAAGCGGAGGCAGAGGGCAGGCTTGCCTCTCTACCCGCCGGAGATCCAGCAGCACCTGGCGTTGAGAAACCAAAGGCAAGGGCAGATGGATTGCTTTTCCCGATTCAAATCCTCCCAGAGCCCTCTCTCATTGTTCAATTCCGCCTCCCCGCTCTTCTCGCAATATTCCCATCGATCCGTCGTCCTTCATAACCCTAATCGAGCGAAGAACCTCTCGTTCCAGTCCACTAATTACGCATCTCCGGTTCAGTTTGGATTAGGCAACTACGATTTCGATCCGCCCCCGGTGCTTCTCCAGTCCCCGCCGGCTTACGCCGCCAAGATGGAGCTCCCTTCAAGCCAATTTTCCTCCAATTCCTGCAACGCCCATATGCCGCAGGGCAACAGCGGCCTCTTGGACGCCCTGCTTGAGGAATCCCATAGAGTCGGAGAACTGCCCAATTCCAAGTGCCCGCCTCTTGATCCCATCGGTGAGGTCCCCTTTTCTGATTCCCTTCCCAGATTAAGCTCTCTCTTAGAGATCACATAACAGAACATTCACTGGCCTCAATTCTTCCATTACTTCTTCCTGTTCCAGGAACTCAAGTGAAGCAAGAGGTAACTGAGGCAGTCGAGAGTGAAAACCATGATGTATCCACTCTGCTGGACATGATCCCGATGCCGACGGCCATGGCTGCCTTTTCCGACTGGTCCAACGGCCCCACCTCGGCGGCCACCACCGATGACGAGATTGGGATCCAGCTGCCCCAGCTTTCATCATCCCAGTCGATGGCGCAGGTGGAGCTTGACTGGGGCATCGGCTCCTCTTGGGATAGCATGCAGTGGGTTAACATGCCCAGAATCTGCTGAGAGGAACAAAAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTGCCGAAATCCCATTATCGGTACATAACTATTTATACTGCGTTTTTCCATCGTCTTGTTGATTGATTTCCGTTGCTACTGCTTGATTTTGAGTGCTTTGTGTTTTGATTCTACGAGCCTTTCTTTCATGCGTTTTATCAAAAAGGGTTTCTAGAAGGGATTGGTTTTCAGTGCATTGAGTCTGCTATTTGTCTTTAGAAGACTTGCACCACAATTATTATTTGATTTTCTATTAACTTTGGCTCTATGTGTTTTTTTTCATTTGGGACTGTAACGTGGAACATATCAAGATGTTAAATTTCTTCATTGACACAAATGGAATTGAGTGTTTAGGCATAAGAGGGAGATGGGAAATCTTCTATCCTTCAGGGTTTAGGGCAACACTTTTATTCTTTTTAAACGATAGGTTCCCACCGCCATTCTTATTTAATGCTTTTTTTCATTACTTGTTAATCATGTTTGTACAAATACCATATGATTAAGAATGTGTTTAGCTACTCAGGTTAATGTATATCATTTTTTTCTAATCAATTAAACATTTTTAATGAAGTTATAATCATAATTTTAACTAATA

Network for GWHGAAEX015159

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	61	108	3.10E-15
PF00249.30	Myb_DNA-binding	114	157	7.50E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.980
SRP064423	SRR2545915	Juvenile tuber	4.040
SRP108465	SRR5643513	five period of Gastrodia elata	10.580
	SRR5643514	five period of Gastrodia elata	5.230
	SRR5643515	five period of Gastrodia elata	5.630
	SRR5643524	five period of Gastrodia elata	5.250
	SRR5643525	five period of Gastrodia elata	4.820
	SRR5643528	five period of Gastrodia elata	5.030
	SRR5643658	five period of Gastrodia elata	5.110
	SRR5643659	five period of Gastrodia elata	5.450
	SRR5643660	five period of Gastrodia elata	6.930
	SRR5643661	five period of Gastrodia elata	6.110
	SRR5643662	five period of Gastrodia elata	9.260
	SRR5643663	five period of Gastrodia elata	11.750
	SRR5643664	five period of Gastrodia elata	21.260
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.550
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.320
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.380
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.210
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	20.030
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	20.030
SRP279888	Gastro	Gastrodia elata tuber	12.08
	Juven	Juvenile tuber	26.67
	Mother_Gastro	Mother tuber of Gastrodia elata	14.30
	Mother_Juven	Mother tuber of Juvenile	29.94