Gene detail

Detail information of GWHGAAEX015175/evm.TU.scaffold_64.174

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2109	3.00E-142	WD40 repeat protein
nr	gi\|743878305\|ref\|XP_010908142.1\|	0	PREDICTED: autophagy-related protein 18f-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q8GUL1\|AT18G_ARATH	3.00E-146	Autophagy-related protein 18g
trEMBL	tr\|M0T302\|M0T302_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P00540_001}
TAIR	AT5G54730	3.00E-142	homolog of yeast autophagy 18 (ATG18) F

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000067	3667521	3677696	-

Transcript Sequence
>GWHTAAEX015175 TATGCGGCGCAGTGAGTGAGCAGTGAGTGAGCGAACGAACGATTCCGTTCGTCCACCTTCTTCGGCGAACGGACGACTATGGCAAATCTTTCGTTCGAAAACGAACGATTCCTTTGAATGAAACCCTACAAAATTAAAAAAGTTATTCGGAGGATTCTTTGGAGCGAACGATCACTCGTCAGAATGAAACCTAAGAAAATTAAAAAATTATTTAATAAATTATTTAATTTTGATACTAAATATTTTTTAGGTAATTGAATGTCTCTAATTGATTAATGATTAGTGAATCTCAAGAAGAAATTATGCTTAACAATATTATAATGACTTGTATCTCTAAAAAAAAAAAAAAGTCATAGTGACACGAGGTAAAAATAGCAGAGGGGAAATAAGATTTGAAAGATAACCAGAATAGTGCCGACCGGTTGGTCTCATCGAGTGTTTCGCAGCATCCGTTAGATACCTGCAGCTTGCGGGACAAATAACAAATTTCTTAATTTTTTAAGGTTTTTTGTACACTGCCCACAATTTTTTCTGCGCTGCATTTACAATCCTGAGAACGGGAGAAGAGTCAAGAAACCCGCCAGCCTCTTCATCTTCTTTTACAATCTTCCCTTTATTAACGATTTTTCCCAATATTATTTGCTATTTTTATCTACTTGAATCCGTATGCATGTAAATAGTTTTCTATTGTTTTTTTTTAATATAGTTTGATGTTAAGATTTAGACATATGATAAGGGGAAAGGCGTAGACGAAAGGTACTCGTAAGCAGAGAGAGAAGGAAGACGAACGCGGAATCGATAGCTTCAGTATCTGATCGCAAGCGATCCCTTGGCAGTTATTTCTGTATTCTTTAGTTGCCCCCCTTGCTCTTCCTCTTTTTGGATTGTAGATGCAAATAACCTTTTATTTCACTAAATCCGCGGGCTTGCAGGCCACCTAAACGAATCATCCGATTCCGTGCGAATCCACGGCTCTTGTATGTTTGTGCAGGAGGGAATCCTGAGAAAGTTGTGATTTTGATTGTTATTTTTTATTGTTTGACCGAATTGGAAGATCAGGGCTTTTAGCTCGTGCACACATGTTGGAAAGCTAGACGAAAGAGTCGCGTTTGCTTTCTTTAGTCGCGGGGATCGTAGGAACAGAGTGGGGTTATGATCTTTGGTCAAAACTTTCGGAAAGCTTCAAGTTTCTCTGTAGACACTAGGGTTCATTCGGATTCGGCGAGGGATATTAGAGCCTGGGAATGAGGAATGATGCGCAGAAGCTGCAGGGATCTGTGCCGAGGAACGGAAGGGGGATTGGGCTGTTCTCCCTCCGGACGTACCTGAGGATTGTTTCATCGGGCGCTTCTACTGTTGCATCGACGGTTCGATCCGCAGGGGCTTCGGTTGCGTCTTCCATTGCTGAGCGCTACGAAGAGGCCACCCGCGATCAGGTGCACTGGGCTGGGTTTGACAAAGTGGAATGTATTGGTGGTATTTTTCGGCAAGTACTTTTGTTAGCCTACCAGCATGGCTTCCAAGTTTGGGATGTTGAAGAGGCAGATGATGTACGACAACTTGCTTCTAGACATGATGGCCCTGTTTCCTTTCTGCAAATCCAAAAGAAACCAACATTATGTAAAAAATTAGAGGATAGATTTGCTGATTTCCGTCCATTGCTTGTAATTGCTGGAGATATATCTTTTGGTGGTGGCAATAATGCTGTGGGCAGTAACTCTTCTCCCGGCAATGGTAGTACTGACTTGGGTAATGACCAGAAGTTACCTACTGCTGTGCGTTTCTATTCCATAAGGTCACATGACTATGTTCATGTTCTAAAGTTCAGATCTGCTGTTTATTCAGTTAGGTGCAGTTCTCGTATTGTTGCTATTTCTCAAGCTTCTCAGATTCATTGTTTCAATGCTGCTACCCTGGAGAGAGAATACAACATTCTTACTCATCCTGTACCTTCAGGGTATCTTGGTTCTCATTCTATAGGCTATGGACCACTTGCTGTTGGCCCTAGATGGTTGGCATATAGTGGAGCTCCTGTTACAGTTCCAAACACCAACCGTGTTAAGCCAGAGCATTTAGCTCCTGCAGGATTGTCTTCATCCCCTAATGGAAGTGTGGTGGCACATTTAGCAAAAGAATCAAGCAAACAACTTGCAGCTGGTATTGTGACTCTTGGTGATTTGGGATATAAGAAGTTGACACAGTATTATTCAGAACTAATGCCTGATGCTAGTGGATCAGCAAAGACTGGAAACCCAAGCTTTACAGTTAATGCACTTAGAACTGGGAATACTACTGATGTGGAAGATGCTGGAGTGGTGATAGTTCGTGATATTGTCTCCAAATCTATAATTGTGCAGATCAGGGCACACAAAAGTCCTATCTCTGCATTATGCTTTGATCCTAGTGGAACTTTATTAGTCACTGCATCTATTCATGGTCACAACATCAACGTCTTCCATATTTTGCCTTCACCTCCTTCAAATTCATCAACATTTTCTGGAACAGGCAGTTCAGTTCATCTTTACAAGCTGCAAAGAGGGATCACAGATGCGATTATTCAGGATATCAGTTTTAGTGATGATAGTCAATGGGTCATGATTAGCTCCTCCCGAGGGACTAGCCATTTGTTTTCAATTTCTCATTCAGAAGGGACTAGTAACCAGTTGCAGACTGTGGATCGTTCAGATGGCTGCTACAGATCAGATATTATTTATTCTCAAAGTTTGGGCAGTTCTAACCCTAATCACTTGAATTCTTTATCACGTCCCATTACATTATCTGTTGTGAGCAGGATTAAGAATGGGAATATTGGGTGGAAAGGTGCTGTTAGTGGTGCAGCTGCAGCTGCCACCGGCAAAGTTAATCCAATATCTGGAGCTATTGCTTCAACGTTCCACAACTACAAGGCTTCTAGTACTTTTCTAGATCCCTCATTACGAACAAAGTATTACCTACTTTTGTTCTCTTCCTCGGGATGTATTATTCAGTATGTTTTGCGTAAGTTAAGAGGGGAAGATTCTTATTTTGATCCTTCTGGTCAGAGTGCTCTCTCTCATGGATTAGCACTACAGTCTGACTCTAGATTTGTAGTTGAACCGCTTCAGAAATGGGACATTTGCCACAAAAGGAATAGAAGAGATAGGAGTGATAATGCAGATGCGTATGGTGAACATGGAAATGGCGAAAATGCTAAACTGTTTCAAAAAATAACAAAAAAAGTAAACAGCGTTCATCCCACTGATTACTCTAATGCAAAATTGAAATTCGGTGCCGAAGAAAATAATCATTTGTATATATCTGAGGTCGAGTTGCAGATGCATTCAGCTCAGGTTTCATTATGGACTAAACCTGGGATATCATTTCAAGTGGTGATGGAGGAAACCTGGAAAATGGATGAAAATAGTTCTGCAGGCGGTGAAATTGAGATAGAGAAAATATCTTATCGAACTGTTGAAGCAAGATCTGAGGATCTGAAACCAGTTCTTGACTATGCCCATAGGTCTGACTTGTGGAGAAGTGGCCTAGACGCCAGAACGAACAATTTGATGGTGAAACCAACATCCGTGTCAACTGAGCGAGGCAACCACAGCTCCTCTGACCCTTTGCCGGAAAGCCCAGCGCCTCTTGAGTTGTACAATGACACTGATGGTAATTACTTTCGCGGATTTGCAATCTCTGCAGAAAATGATGAGGGCTTTGTAAATACAACCGACAACGTGTCGCTCATCAATCACCAGCTTGAAATTGTGAATAGTTTGGAAGGGCTGATGATGGATTCACCGCTGGAGTTCGTAAATAGCGATAAGAACATGGAATTAGATTGTAACACTGAGGATGTTCGTAGTGCAGTTTCTTAAGGTGCAGCCTCTTCAGTTATACATCATCAAATCTTTTTTCATATATAATTAAAACTGTGCTGCCAATCTATTCTTTTATTCTACCTAGAGGCATATCATCATGTATTATGTGTTAACTACAGTAATGGTGGGATTGTAAAGAAAAGCAAGGGTGATTCATAACAGGAGAAAGTCATCACTGTTCTTTCACTCGGCGACCGGGATTCTGTTTCGGTATGCCTTTGTAAATAGCAGATTTGTTTTGAAATTTAATAAAGTCTACCAAATGTTGTAAATAGTGATCAGGATTGCAGTTAACATTGTTGTCGTGCTTTATCAGTATGATAGAACTGATTTGCAGACCCACTTTTACCTGAAGAAATATCTCTTTTTTATTAAGTTCTTGCGTTGTTACTCGTCTTGCACTTGCTCACCTCAGGTCTCTTACATTTTTTTGTTCATTGAAACATGTGCTTGGTGTGTGTGGTTGTGTCTAGTTTTTTTTTTTTTGTTTGCTTTTCTCTCTTGTTGATGTCAAAGTTGTTATTATTATTTTGCTTGCTTGTTACAAACAGCAAACCTTTTGTTATTGCTAATATAAATGCTAATTTAGAATTGACATCATATATTGTACTAGTAGTGTGCAGATGATTTAAATTGCATACAAGCTCAGCAAGTATTTCAGTATTGGATCTATGCCCTACAATTGACATTAGTACATTTTCTTGCGTCTATCATGTGCATTAGCTTTAAAGTTGTTTATTTCTCTCCTTTTGAATATCTTTTCTAATTACTGTTAGGTATTTTAGCTTAGAAATATAGGTTTAGAATGATAGAATAATGGTACCAAGGGCTGACACCATTAAAACATTAAAAATTCGGTATCTTCAGGATGTTGTAATAAATATTCAGTACATTTGAAATTTAAAGAGTCATGCATTAAAACTCATCTAGCAACATGCATAAATAAGCTGTGCAAAACTACTTTATCTAAGAAAGCATCGTCTAT

Network for GWHGAAEX015175

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12490.7	BCAS3	507	745	1.80E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	66.610
SRP064423	SRR2545915	Juvenile tuber	47.560
SRP108465	SRR5643513	five period of Gastrodia elata	56.890
	SRR5643514	five period of Gastrodia elata	57.950
	SRR5643515	five period of Gastrodia elata	60.570
	SRR5643524	five period of Gastrodia elata	60.490
	SRR5643525	five period of Gastrodia elata	71.440
	SRR5643528	five period of Gastrodia elata	51.090
	SRR5643658	five period of Gastrodia elata	83.650
	SRR5643659	five period of Gastrodia elata	60.780
	SRR5643660	five period of Gastrodia elata	71.490
	SRR5643661	five period of Gastrodia elata	55.300
	SRR5643662	five period of Gastrodia elata	59.790
	SRR5643663	five period of Gastrodia elata	70.100
	SRR5643664	five period of Gastrodia elata	80.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	64.940
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	55.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	49.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	76.940
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	62.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	77.450
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	58.670
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	55.150
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.940
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	38.070
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	42.500
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	42.500
SRP279888	Gastro	Gastrodia elata tuber	60.95
	Juven	Juvenile tuber	78.58
	Mother_Gastro	Mother tuber of Gastrodia elata	71.48
	Mother_Juven	Mother tuber of Juvenile	65.45