Detail information of GWHGAAEX015183/evm.TU.scaffold_64.183
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|284166310|ref|YP_003404589.1| | 5.00E-52 | pectinesterase [Haloterrigena turkmenica DSM 5511] |
| nr | gi|209962619|gb|ACJ02103.1| | 0 | pectin methylesterase [Oncidium hybrid cultivar] |
| Swissprot | tr|P14280|PME1_SOLLC | 0 | Pectinesterase 1 (Precursor) |
| trEMBL | tr|B6V9S5|B6V9S5_ONCHC | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
| TAIR | AT1G11580 | 0 | methylesterase PCR A |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000067 | 3838434 | 3840053 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015183
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04043.14 | PMEI | 58 | 171 | 5.60E-17 |
| PF01095.18 | Pectinesterase | 228 | 524 | 1.10E-139 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01051 | E3.1.1.11 | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 | ||
| Two-component system | map02020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042545 | Biological Process | cell wall modification |
| GO:0004857 | Molecular Function | enzyme inhibitor activity |
| GO:0030599 | Molecular Function | pectinesterase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 314.580 |
| SRR2545915 | Juvenile tuber | 1447.850 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3584.650 |
| SRR5643514 | five period of Gastrodia elata | 1606.810 | |
| SRR5643515 | five period of Gastrodia elata | 2421.790 | |
| SRR5643524 | five period of Gastrodia elata | 1862.630 | |
| SRR5643525 | five period of Gastrodia elata | 1138.720 | |
| SRR5643528 | five period of Gastrodia elata | 597.220 | |
| SRR5643658 | five period of Gastrodia elata | 1144.380 | |
| SRR5643659 | five period of Gastrodia elata | 2691.940 | |
| SRR5643660 | five period of Gastrodia elata | 2316.040 | |
| SRR5643661 | five period of Gastrodia elata | 3027.180 | |
| SRR5643662 | five period of Gastrodia elata | 2471.810 | |
| SRR5643663 | five period of Gastrodia elata | 3012.660 | |
| SRR5643664 | five period of Gastrodia elata | 2374.680 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3500.830 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1719.350 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3207.470 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3077.850 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2201.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1533.110 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1794.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3462.590 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1575.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1557.440 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2494.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2494.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1,537.11 |
| Juven | Juvenile tuber | 863.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 550.91 | |
| Mother_Juven | Mother tuber of Juvenile | 721.87 |