Detail information of GWHGAAEX015194/evm.TU.scaffold_64.196
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1855 | 3.00E-70 | Predicted RNA-binding protein |
| nr | gi|672167623|ref|XP_008803782.1| | 1.94E-133 | PREDICTED: la-related protein 6C [Phoenix dactylifera] |
| Swissprot | tr|Q9LHL3|LRP6C_ARATH | 8.00E-71 | La-related protein 6C |
| trEMBL | tr|M0SRI8|M0SRI8_MUSAM | 7.00E-112 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P23770_001} |
| TAIR | AT3G19090 | 3.00E-70 | RNA-binding protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000067 | 4037244 | 4039729 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015194
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05383.16 | La | 85 | 142 | 1.40E-14 |
| PF00076.21 | RRM_1 | 175 | 241 | 7.20E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006396 | Biological Process | RNA processing |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005634 | Cellular Component | nucleus |
| GO:1990904 | Cellular Component | ribonucleoprotein complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.060 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.170 |
| SRR5643514 | five period of Gastrodia elata | 0.090 | |
| SRR5643515 | five period of Gastrodia elata | 0.110 | |
| SRR5643524 | five period of Gastrodia elata | 0.140 | |
| SRR5643525 | five period of Gastrodia elata | 1.170 | |
| SRR5643528 | five period of Gastrodia elata | 0.640 | |
| SRR5643658 | five period of Gastrodia elata | 0.390 | |
| SRR5643659 | five period of Gastrodia elata | 0.470 | |
| SRR5643660 | five period of Gastrodia elata | 0.310 | |
| SRR5643661 | five period of Gastrodia elata | 0.470 | |
| SRR5643662 | five period of Gastrodia elata | 0.460 | |
| SRR5643663 | five period of Gastrodia elata | 0.430 | |
| SRR5643664 | five period of Gastrodia elata | 0.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.260 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.050 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.080 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.160 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.190 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.260 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.260 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.90 |
| Juven | Juvenile tuber | 0.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.45 | |
| Mother_Juven | Mother tuber of Juvenile | 0.25 |