Detail information of GWHGAAEX015198/evm.TU.scaffold_64.200
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 4.00E-93 | FOG: PPR repeat |
| nr | gi|743802347|ref|XP_010926590.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like [Elaeis guineensis] |
| Swissprot | tr|Q9CA54|PP122_ARATH | 1.00E-93 | Pentatricopeptide repeat-containing protein At1g74630 |
| trEMBL | tr|C5WWS7|C5WWS7_SORBI | 5.00E-150 | Putative uncharacterized protein Sb01g045890 {ECO:0000313|EMBL:EER95433.1} |
| TAIR | AT1G74630 | 4.00E-93 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000067 | 4070821 | 4072892 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015198
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 91 | 117 | 0.015 |
| PF01535.19 | PPR | 167 | 191 | 0.14 |
| PF01535.19 | PPR | 197 | 221 | 0.34 |
| PF01535.19 | PPR | 231 | 256 | 3.60E-08 |
| PF01535.19 | PPR | 300 | 326 | 3.50E-06 |
| PF01535.19 | PPR | 331 | 356 | 0.00054 |
| PF01535.19 | PPR | 373 | 398 | 0.0097 |
| PF01535.19 | PPR | 405 | 426 | 0.08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.900 |
| SRR2545915 | Juvenile tuber | 0.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.260 |
| SRR5643514 | five period of Gastrodia elata | 1.420 | |
| SRR5643515 | five period of Gastrodia elata | 1.490 | |
| SRR5643524 | five period of Gastrodia elata | 1.230 | |
| SRR5643525 | five period of Gastrodia elata | 0.610 | |
| SRR5643528 | five period of Gastrodia elata | 0.680 | |
| SRR5643658 | five period of Gastrodia elata | 0.320 | |
| SRR5643659 | five period of Gastrodia elata | 2.140 | |
| SRR5643660 | five period of Gastrodia elata | 1.540 | |
| SRR5643661 | five period of Gastrodia elata | 2.530 | |
| SRR5643662 | five period of Gastrodia elata | 2.660 | |
| SRR5643663 | five period of Gastrodia elata | 2.960 | |
| SRR5643664 | five period of Gastrodia elata | 2.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.760 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.650 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.830 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.280 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.740 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.770 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.100 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.100 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.51 |
| Juven | Juvenile tuber | 2.45 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.81 | |
| Mother_Juven | Mother tuber of Juvenile | 1.51 |