Detail information of GWHGAAEX015200/evm.TU.scaffold_64.202
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|339484857|ref|YP_004696643.1| | 2.00E-22 | serine/threonine protein kinase [Nitrosomonas sp. Is79A3] |
| nr | gi|743793922|ref|XP_010924049.1| | 0 | PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Elaeis guineensis] |
| Swissprot | tr|D6NTT4|SD18_ARATH | 0 | Receptor-like serine/threonine-protein kinase SD1-8 (Precursor) |
| trEMBL | tr|A0A067JAQ7|A0A067JAQ7_JATCU | 0 | Serine/threonine-protein kinase {ECO:0000256|PIRNR:PIRNR000641} |
| TAIR | AT4G21380 | 0 | receptor kinase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000067 | 4112722 | 4116305 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015200
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01453.23 | B_lectin | 71 | 181 | 6.90E-22 |
| PF00954.19 | S_locus_glycop | 217 | 329 | 4.40E-25 |
| PF08276.10 | PAN_2 | 350 | 413 | 6.60E-17 |
| PF07714.16 | Pkinase_Tyr | 511 | 775 | 2.90E-50 |
| PF11883.7 | DUF3403 | 781 | 827 | 2.20E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_DLSV |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0048544 | Biological Process | recognition of pollen |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004674 | Molecular Function | protein serine/threonine kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.610 |
| SRR2545915 | Juvenile tuber | 4.670 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.030 |
| SRR5643514 | five period of Gastrodia elata | 4.970 | |
| SRR5643515 | five period of Gastrodia elata | 5.720 | |
| SRR5643524 | five period of Gastrodia elata | 4.830 | |
| SRR5643525 | five period of Gastrodia elata | 5.490 | |
| SRR5643528 | five period of Gastrodia elata | 7.610 | |
| SRR5643658 | five period of Gastrodia elata | 4.540 | |
| SRR5643659 | five period of Gastrodia elata | 12.480 | |
| SRR5643660 | five period of Gastrodia elata | 7.910 | |
| SRR5643661 | five period of Gastrodia elata | 9.910 | |
| SRR5643662 | five period of Gastrodia elata | 12.670 | |
| SRR5643663 | five period of Gastrodia elata | 12.050 | |
| SRR5643664 | five period of Gastrodia elata | 14.560 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.390 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.700 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.220 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.710 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.740 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.620 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.620 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.49 |
| Juven | Juvenile tuber | 3.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.46 | |
| Mother_Juven | Mother tuber of Juvenile | 2.78 |