Detail information of GWHGAAEX015211/evm.TU.scaffold_64.214


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|183222158|ref|YP_001840154.1|6.00E-11RNA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)']
KOGKOG01182.00E-141FOG: RRM domain
nrgi|695060758|ref|XP_009418782.1|3.78E-171PREDICTED: polyadenylate-binding protein RBP45-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9LEB4|RBP45_NICPL2.00E-142Polyadenylate-binding protein RBP45
trEMBLtr|M0TMB0|M0TMB0_MUSAM3.00E-168Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P03580_001}
TAIRAT5G549002.00E-141RNA-binding protein 45A

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006743420964347819+
Transcript Sequence

Network for GWHGAAEX015211

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1991653.30E-13
PF00076.21RRM_11932611.10E-14
PF00076.21RRM_13173811.60E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms596.240
SRR2545915Juvenile tuber635.200
SRP108465SRR5643513five period of Gastrodia elata205.250
SRR5643514five period of Gastrodia elata162.180
SRR5643515five period of Gastrodia elata167.800
SRR5643524five period of Gastrodia elata140.390
SRR5643525five period of Gastrodia elata198.460
SRR5643528five period of Gastrodia elata148.880
SRR5643658five period of Gastrodia elata192.430
SRR5643659five period of Gastrodia elata495.840
SRR5643660five period of Gastrodia elata692.130
SRR5643661five period of Gastrodia elata537.720
SRR5643662five period of Gastrodia elata832.680
SRR5643663five period of Gastrodia elata720.620
SRR5643664five period of Gastrodia elata1091.450
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1380.360
SRR6049655Rhizomagastrodiae_C368-T10_good_1271.990
SRR6049656Rhizomagastrodiae_C368-T07_good_1329.450
SRR6049657Rhizomagastrodiae_C368-T07_good_1475.480
SRR6049658Rhizomagastrodiae_C368-T04_good_1485.670
SRR6049659Rhizomagastrodiae_C368-T04_good_1526.900
SRR6049660Rhizomagastrodiae_C368-T01_good_1453.820
SRR6049661Rhizomagastrodiae_C368-T04_good_1418.970
SRR6049662Rhizomagastrodiae_C368-T01_good_1270.740
SRR6049663Rhizomagastrodiae_C368-T01_good_1357.660
SRR6049664Rhizomagastrodiae_C368-T10_good_1220.130
SRR6049665Rhizomagastrodiae_C368-T10_good_1220.130
SRP279888GastroGastrodia elata tuber 670.78
JuvenJuvenile tuber175.05
Mother_GastroMother tuber of Gastrodia elata 181.64
Mother_JuvenMother tuber of Juvenile 142.37