Detail information of GWHGAAEX015216/evm.TU.scaffold_64.219


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41971.00E-115FOG: PPR repeat
nrgi|743793413|ref|XP_010923923.1|5.14E-167PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Elaeis guineensis]
Swissprottr|Q8LE47|PPR87_ARATH3.00E-116Pentatricopeptide repeat-containing protein At1g61870, mitochondrial (Precursor)
trEMBLtr|M0T2Y9|M0T2Y9_MUSAM1.00E-142Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P00410_001}
TAIRAT1G618701.00E-115pentatricopeptide repeat 336

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006744276474428852-
Transcript Sequence

Network for GWHGAAEX015216

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13041.5PPR_21782191.50E-07
PF13041.5PPR_22492971.60E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms21.220
SRR2545915Juvenile tuber19.900
SRP108465SRR5643513five period of Gastrodia elata16.590
SRR5643514five period of Gastrodia elata14.430
SRR5643515five period of Gastrodia elata18.510
SRR5643524five period of Gastrodia elata13.670
SRR5643525five period of Gastrodia elata16.630
SRR5643528five period of Gastrodia elata18.770
SRR5643658five period of Gastrodia elata21.500
SRR5643659five period of Gastrodia elata19.880
SRR5643660five period of Gastrodia elata25.860
SRR5643661five period of Gastrodia elata19.670
SRR5643662five period of Gastrodia elata27.540
SRR5643663five period of Gastrodia elata22.850
SRR5643664five period of Gastrodia elata19.830
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.180
SRR6049655Rhizomagastrodiae_C368-T10_good_124.710
SRR6049656Rhizomagastrodiae_C368-T07_good_119.140
SRR6049657Rhizomagastrodiae_C368-T07_good_117.000
SRR6049658Rhizomagastrodiae_C368-T04_good_119.580
SRR6049659Rhizomagastrodiae_C368-T04_good_117.750
SRR6049660Rhizomagastrodiae_C368-T01_good_118.600
SRR6049661Rhizomagastrodiae_C368-T04_good_116.330
SRR6049662Rhizomagastrodiae_C368-T01_good_121.810
SRR6049663Rhizomagastrodiae_C368-T01_good_119.960
SRR6049664Rhizomagastrodiae_C368-T10_good_117.530
SRR6049665Rhizomagastrodiae_C368-T10_good_117.530
SRP279888GastroGastrodia elata tuber 16.75
JuvenJuvenile tuber9.98
Mother_GastroMother tuber of Gastrodia elata 15.47
Mother_JuvenMother tuber of Juvenile 9.60