Gene detail

Detail information of GWHGAAEX015220/evm.TU.scaffold_64.225

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|57640432\|ref\|YP_182910.1\|	3.00E-29	Met-10+ like protein [Thermococcus kodakarensis KOD1]
KOG	KOG2078	2.00E-135	tRNA modification enzyme
nr	gi\|743758634\|ref\|XP_010927890.1\|	0	PREDICTED: tRNA (guanine(37)-N1)-methyltransferase 1 [Elaeis guineensis]
Swissprot	tr\|F6H2F8\|TRM51_VITVI	6.00E-173	tRNA (guanine(37)-N1)-methyltransferase 1 {ECO:0000255\|HAMAP-Rule:MF_03152}
trEMBL	tr\|M0RGQ5\|M0RGQ5_MUSAM	2.00E-172	tRNA (guanine(37)-N1)-methyltransferase {ECO:0000256\|HAMAP-Rule:MF_03152}
TAIR	AT4G27340	2.00E-135	Met-10+ like family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000067	4513483	4543713	-

Transcript Sequence
>GWHTAAEX015220 ATGGCGTCTTTCACGTTGGCTCTCCGGCCAAATCCCACATTGTGGTTCTCTCTATCAACGAGCAGACGCTGGCACTCCTCCTGCTCCCCTTGGTCTTCTTCCATCAAAGCCCTAAATGCCGTGCAACTTCTAACCATAGATACCGCACACTACGGCCCCTCCCTTCGCCGAGGCCAACGGCCAAATCCTTCTTATTCCGGTGTTGACGCCTCTGAATGCGATCGTAGCTCATTTATCGACCGCTCAGCGTTCTCGAGAACATTTAACATCGCCGCCCTACGTATCCCCGCACCGGATTGCTTCATTATCGAGGATCGCATCCGCGGCCACCTCCTCAACTGGCCACGTATCCGTAATGTCGCCCGCACTCCCGGCGATGACGTCGAAACCGACATCCAAAACCTTCTCCGCGACGGAGATGGCGAAATGGGACATGGAATTCTTTCCCTCGCCTGCAGTGCAGGTGAGGAACATGAAAACGTGAAGAAGGCTATGAGCCCGGTGCTCTACAGGGAAAAGCTCGCGAAGGAGTTCAATTGCAGAGGGTTCTTGAAGTTTCGTAACTTGGCTAAGATGTCGAGGCCGAAGAAGAAGAAGATAAGGGAGAAAGCGGAAGGGGAGGGAGCTAAGGTTAAGGATAAGGAGGAGAAGAAAGTGTATTCGGTGATGGAGGTTATTGGGGTGAGTGAGGGGGGAGAGGATGATATGAGCGGTTTGTTAGGTCCCGAGTTCCGTGATGGGAGGTGGAAAGGCTCGACGAGATTGCTTCTGCTTGATGAGCGGTATGCGGATAAGGGGTTTGAGGAACTACCGGATGCTGTTAAGGCAATTCTGAATGGAGGTAGAATGCCTTGTAAGCTTCCAGCGTGTGAACTTGTACTGTGCCAACTGACCTTGTTCTATAATTATTGGCATATGAATGAGGTTTTGGAATCCTTACTCCCTGAAGGTATACTAGTTCCATCTGGATTTGAGACTGTGGGGCACATTGCACATTTGAATTTGGGTGAAGAGCACTTACCTTACAAGAAACTTATTGCACAGGTAGTTCTTGACAAGAACAGGCCAAAAATACAAACAGTTGTGAACAAGATCGATGCTATTCAAAATGATTATAGAATCATGCAACTAGAAATATTGGCAGGGAACCATTCTCTTGTTACTACAGTTGTAGAGAATGGAATCAAATTTCAAGTTGATTTGGCTAAAGTTTACTGGAATTCAAAATTGGCGACTGAAAGGCAAAGGCTTGTAAAGTGCTTTGATTGCTCTGATGTCGTTTGTGATGTATTTTCTGGTGTTGGCCCTATAACTCTTTCTGCAGCAAAGAAAGTGAGGTTTGTATTTGCAAATGATCTGAACCCAAATGCAGTGGAGTATCTTGAGAGAAATGTAATTCTCAATAAGTTGGATAGAAAAATTAAGAACTTCGCCAAAGAAACGTTGAATCCGGAGAAGAGTTTGATTCGTTCAAACGAATTGAGGCCGGAGAAGACGCTGCTCGACTCTACTTCTTCCACGTAA

Network for GWHGAAEX015220

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02475.15	Met_10	323	479	7.10E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.030
SRP064423	SRR2545915	Juvenile tuber	5.140
SRP108465	SRR5643513	five period of Gastrodia elata	2.800
	SRR5643514	five period of Gastrodia elata	5.140
	SRR5643515	five period of Gastrodia elata	4.010
	SRR5643524	five period of Gastrodia elata	3.660
	SRR5643525	five period of Gastrodia elata	5.100
	SRR5643528	five period of Gastrodia elata	4.400
	SRR5643658	five period of Gastrodia elata	2.980
	SRR5643659	five period of Gastrodia elata	2.990
	SRR5643660	five period of Gastrodia elata	5.270
	SRR5643661	five period of Gastrodia elata	4.000
	SRR5643662	five period of Gastrodia elata	4.880
	SRR5643663	five period of Gastrodia elata	3.040
	SRR5643664	five period of Gastrodia elata	4.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.470
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.720
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.800
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.750
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.510
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.820
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.210
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.210
SRP279888	Gastro	Gastrodia elata tuber	3.78
	Juven	Juvenile tuber	5.98
	Mother_Gastro	Mother tuber of Gastrodia elata	1.65
	Mother_Juven	Mother tuber of Juvenile	6.87