Gene detail

Detail information of GWHGAAEX015228/evm.TU.scaffold_64.235

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1356	6.00E-06	Putative transcription factor 5qNCA, contains JmjC domain
nr	gi\|414887083\|tpg\|DAA63097.1\|	6.96E-19	TPA: putative jumonji-like transcription factor family protein [Zea mays]
Swissprot	tr\|Q6EPP9\|GRF10_ORYSJ	7.00E-06	Growth-regulating factor 10
trEMBL	tr\|A0A096QAD6\|A0A096QAD6_MAIZE	3.00E-19	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GRMZM2G032071_P02}
trEMBL	tr\|A0A096QAD6\|A0A096QAD6_MAIZE	4.00E-08	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GRMZM2G032071_P02}
trEMBL	tr\|A0A096QAD6\|A0A096QAD6_MAIZE	2.00E-06	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GRMZM2G032071_P02}
TAIR	AT1G09060	6.00E-06	Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000067	4650399	4651937	+

Transcript Sequence
>GWHTAAEX015228 ATGGAATTACAAATCTCGGAGCTGCCATCCCCAGTCTTTCGGACTGCTCCTCTCGCCCTCATTCTTTGCTGTAACAGGAAATGCCAGCGGTTTTCCAATCAATTAATGGGTAAACGGCTATTTTCCGGTGATCTCACTCCTTTACCAGACAATCTTCGGTGCCGGCGATCCGATGGCCGGCAATGGCGGTGCCCGCAGCCGGTCAAATCTGGTCTCAGCTTTTGCGAGCATCATTACCAGCAGGTACGCCGTAACCAGGGTAACATCAAGAACGCCAACCCTAAGAAGAAGCTTCTTAGGGCCGAATCGCCGTTGGCGAAAAAGAGACGGCGGAGGCCGCTGATCAAGGAGTCTCAACCGCCGCCTGCGAAAACTAAGTCGTCCGAGAAGATGGAAGAGGTGGATGTGGTGAGAAAAGCTTCTGATCTGAAAGAAGATAAGGACCCTTCCTTGCATGATCAATCTTTCCATCAGCAACCCGATGGCCGACAATGTCATTGCTCGATGCGGAGACATCGCCTTGCTGCCGAACAGATCCCGCCAATGAAGCATTCAAGAAGGAAATGGCTCAAGGGAGAAACTCGAAATAGAGAGTCGATTTGGAAGAATGAACTGGAGCTGGGTGAGTGTGGCACGGAGTCTGCTGAGCCTACGGTGATGAGGAAACTTCCAATTCCAGATAAGATCCGGTGCCGGCGTTCCGATGGTCGAAAATGGCGGTGCACACATCCGGCCATTCCTGGTCTCAGCTTCTGTGAGTACCACCAAATGCGCTACATAGAGACATACCGTCAGAGGACTGGGGTTAGGGCCGCAGAACCACGTCGGAGATCAAAGTTGCGGCTGATCGGGGAAGAGCTAGCGGAGAGTCTAATGAGGATGGAACAAAATGAGGAATGCTTGAAGTCCCCTGAGCTGACTATTTCTGGATTAAATTCTTGCGTGGAAAACCTATTATGCTACAAAGTGGATAATAGCCAAAACAGGGAGCCAAAGCAAAAGAAGAAGAATGTGAAGGCCATCGAACCCTTTATTTCAAAGAAGACCCACTTCCTAACCCTACAGAATCCCTTACAGTGTCGGCGATCCAATGGGCGCAAATGGAGGTGCCCTCATCTGGCTATACCTAGCGTTGGCTTCTGCCAGTACCACTTTGTTCAGAGGTGCAAACAGGGCAAAAAGAAAAACTCGAAATCGGATTTGGTCATCAAGCGCAAGCAGGGAAAGCGCTTGAAGCTACGGCTGAGGGGGGAGCTGCCTGCGGAAGAGATGGCGAGGATGTCACAGGAAGAGAGGAATGCGAGAATGGAGGTAAGCCAACTAGAGATCACAAAGGACCTTCCCAATGGTATGATGGCGATCTTGCCAGTATCAGCTTTTGGTTTGGTCGATGCATCTCCTCGTATCTGTAGAAAGATCGGGTCTGAATATGGGTACTTTTTGGGAAGATGTTTCCGATCAAAGAATGCTGAGTTAGTGCCACTGGTGAGGATTCAGGTGACACCTAATGTTCTGGTTTTTATAATAAAATGCCCTTAA

Network for GWHGAAEX015228

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08879.9	WRC	49	86	1.80E-13
PF08879.9	WRC	226	264	1.70E-13
PF08879.9	WRC	356	395	1.40E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.540
SRP064423	SRR2545915	Juvenile tuber	5.260
SRP108465	SRR5643513	five period of Gastrodia elata	1.970
	SRR5643514	five period of Gastrodia elata	1.510
	SRR5643515	five period of Gastrodia elata	1.190
	SRR5643524	five period of Gastrodia elata	2.070
	SRR5643525	five period of Gastrodia elata	1.750
	SRR5643528	five period of Gastrodia elata	2.580
	SRR5643658	five period of Gastrodia elata	0.810
	SRR5643659	five period of Gastrodia elata	3.740
	SRR5643660	five period of Gastrodia elata	2.320
	SRR5643661	five period of Gastrodia elata	3.380
	SRR5643662	five period of Gastrodia elata	4.310
	SRR5643663	five period of Gastrodia elata	3.120
	SRR5643664	five period of Gastrodia elata	3.340
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.470
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.580
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.970
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.280
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.370
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.250
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.500
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.650
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.650
SRP279888	Gastro	Gastrodia elata tuber	2.24
	Juven	Juvenile tuber	4.83
	Mother_Gastro	Mother tuber of Gastrodia elata	4.53
	Mother_Juven	Mother tuber of Juvenile	5.27