Detail information of GWHGAAEX015232/evm.TU.scaffold_64.240


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672184780|ref|XP_008812650.1|3.60E-138PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Phoenix dactylifera]
Swissprottr|Q7XAB8|THF1_SOLTU4.00E-125Protein THYLAKOID FORMATION1, chloroplastic (Precursor)
trEMBLtr|W1P961|W1P961_AMBTC9.00E-137Uncharacterized protein {ECO:0000313|EMBL:ERN03530.1}
TAIRAT2G208903.00E-121photosystem II reaction center PSB29 protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006747475874781926-
Transcript Sequence

Network for GWHGAAEX015232

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11264.7ThylakoidFormat612661.80E-67
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0015979Biological Processphotosynthesis
GO:0010207Biological Processphotosystem II assembly

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms33.070
SRR2545915Juvenile tuber29.530
SRP108465SRR5643513five period of Gastrodia elata24.760
SRR5643514five period of Gastrodia elata21.970
SRR5643515five period of Gastrodia elata24.180
SRR5643524five period of Gastrodia elata23.210
SRR5643525five period of Gastrodia elata31.870
SRR5643528five period of Gastrodia elata24.680
SRR5643658five period of Gastrodia elata29.110
SRR5643659five period of Gastrodia elata17.700
SRR5643660five period of Gastrodia elata16.670
SRR5643661five period of Gastrodia elata17.680
SRR5643662five period of Gastrodia elata18.430
SRR5643663five period of Gastrodia elata18.450
SRR5643664five period of Gastrodia elata21.780
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_130.010
SRR6049655Rhizomagastrodiae_C368-T10_good_156.990
SRR6049656Rhizomagastrodiae_C368-T07_good_127.580
SRR6049657Rhizomagastrodiae_C368-T07_good_130.900
SRR6049658Rhizomagastrodiae_C368-T04_good_132.060
SRR6049659Rhizomagastrodiae_C368-T04_good_139.490
SRR6049660Rhizomagastrodiae_C368-T01_good_127.280
SRR6049661Rhizomagastrodiae_C368-T04_good_128.060
SRR6049662Rhizomagastrodiae_C368-T01_good_120.160
SRR6049663Rhizomagastrodiae_C368-T01_good_122.080
SRR6049664Rhizomagastrodiae_C368-T10_good_132.700
SRR6049665Rhizomagastrodiae_C368-T10_good_132.700
SRP279888GastroGastrodia elata tuber 21.64
JuvenJuvenile tuber25.22
Mother_GastroMother tuber of Gastrodia elata 45.74
Mother_JuvenMother tuber of Juvenile 29.14