Detail information of GWHGAAEX015238/evm.TU.scaffold_64.247
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|389867082|ref|YP_006369323.1| | 2.00E-27 | Fatty acid desaturase [Modestobacter marinus] |
| nr | gi|380004956|gb|AFD28913.1| | 4.38E-163 | stearoyl-ACP desaturase-like protein 4 [Ophrys x arachnitiformis subsp. archipelagi] |
| Swissprot | tr|P22337|STAD_RICCO | 8.00E-157 | Acyl-[acyl-carrier-protein] desaturase, chloroplastic (Precursor) |
| trEMBL | tr|H8ZQ25|H8ZQ25_OPHAA | 2.00E-163 | Acyl-[acyl-carrier-protein] desaturase {ECO:0000256|RuleBase:RU000582} |
| TAIR | AT3G02630 | 4.00E-153 | Plant stearoyl-acyl-carrier-protein desaturase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000067 | 4913548 | 4914968 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015238
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03405.13 | FA_desaturase_2 | 1 | 311 | 1.30E-139 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03921 | FAB2, SSI2, desA1 | Metabolic pathways | map01100 |
| Fatty acid metabolism | map01212 | ||
| Fatty acid biosynthesis | map00061 | ||
| Biosynthesis of unsaturated fatty acids | map01040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0006631 | Biological Process | fatty acid metabolic process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0045300 | Molecular Function | acyl-[acyl-carrier-protein] desaturase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.060 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.020 |
| SRR5643514 | five period of Gastrodia elata | 0.750 | |
| SRR5643515 | five period of Gastrodia elata | 2.860 | |
| SRR5643524 | five period of Gastrodia elata | 0.990 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.060 | |
| SRR5643661 | five period of Gastrodia elata | 0.110 | |
| SRR5643662 | five period of Gastrodia elata | 0.220 | |
| SRR5643663 | five period of Gastrodia elata | 0.040 | |
| SRR5643664 | five period of Gastrodia elata | 0.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.220 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 38.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.050 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.100 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 36.160 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.290 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 42.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 42.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 1.85 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.86 | |
| Mother_Juven | Mother tuber of Juvenile | 1.01 |