Detail information of GWHGAAEX015239/evm.TU.scaffold_645.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0916 | 0 | 1,3-beta-glucan synthase/callose synthase catalytic subunit |
| nr | gi|695044112|ref|XP_009409788.1| | 0 | PREDICTED: callose synthase 5-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q3B724|CALS5_ARATH | 0 | Callose synthase 5 |
| trEMBL | tr|F6I0E7|F6I0E7_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB60413.1} |
| TAIR | AT1G05570 | 0 | callose synthase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000637 | 2906 | 20394 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015239
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04652.15 | Vta1 | 58 | 196 | 5.50E-15 |
| PF14288.5 | FKS1_dom1 | 353 | 465 | 2.40E-41 |
| PF02364.14 | Glucan_synthase | 1081 | 1167 | 1.50E-26 |
| PF02364.14 | Glucan_synthase | 1171 | 1773 | 1.80E-219 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT48 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006075 | Biological Process | (1->3)-beta-D-glucan biosynthetic process |
| GO:0003843 | Molecular Function | 1,3-beta-D-glucan synthase activity |
| GO:0000148 | Cellular Component | 1,3-beta-D-glucan synthase complex |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.910 |
| SRR2545915 | Juvenile tuber | 17.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.040 |
| SRR5643514 | five period of Gastrodia elata | 17.720 | |
| SRR5643515 | five period of Gastrodia elata | 16.730 | |
| SRR5643524 | five period of Gastrodia elata | 16.340 | |
| SRR5643525 | five period of Gastrodia elata | 15.500 | |
| SRR5643528 | five period of Gastrodia elata | 18.130 | |
| SRR5643658 | five period of Gastrodia elata | 11.760 | |
| SRR5643659 | five period of Gastrodia elata | 20.210 | |
| SRR5643660 | five period of Gastrodia elata | 22.590 | |
| SRR5643661 | five period of Gastrodia elata | 24.810 | |
| SRR5643662 | five period of Gastrodia elata | 23.950 | |
| SRR5643663 | five period of Gastrodia elata | 22.350 | |
| SRR5643664 | five period of Gastrodia elata | 28.900 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.720 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.950 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 23.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.220 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.190 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 37.22 |
| Juven | Juvenile tuber | 28.05 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 53.99 | |
| Mother_Juven | Mother tuber of Juvenile | 37.89 |