Detail information of GWHGAAEX015242/evm.TU.scaffold_65.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|109900095|ref|YP_663350.1| | 4.00E-06 | hypothetical protein Patl_3796 [Pseudoalteromonas atlantica T6c] |
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672134714|ref|XP_008791006.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g41720 [Phoenix dactylifera] |
| Swissprot | tr|Q8RWS8|PP199_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g41720 |
| trEMBL | tr|M0TJF2|M0TJF2_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P21150_001} |
| TAIR | AT2G41720 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000063 | 120553 | 176875 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015242
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 160 | 202 | 1.20E-10 |
| PF13041.5 | PPR_2 | 228 | 273 | 3.80E-11 |
| PF13041.5 | PPR_2 | 296 | 345 | 1.30E-08 |
| PF13812.5 | PPR_3 | 392 | 451 | 8.90E-18 |
| PF13041.5 | PPR_2 | 509 | 557 | 3.10E-12 |
| PF01535.19 | PPR | 582 | 608 | 0.022 |
| PF13041.5 | PPR_2 | 613 | 660 | 9.40E-11 |
| PF01535.19 | PPR | 724 | 750 | 0.18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.510 |
| SRR2545915 | Juvenile tuber | 2.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.440 |
| SRR5643514 | five period of Gastrodia elata | 1.610 | |
| SRR5643515 | five period of Gastrodia elata | 1.300 | |
| SRR5643524 | five period of Gastrodia elata | 1.320 | |
| SRR5643525 | five period of Gastrodia elata | 3.010 | |
| SRR5643528 | five period of Gastrodia elata | 3.990 | |
| SRR5643658 | five period of Gastrodia elata | 4.390 | |
| SRR5643659 | five period of Gastrodia elata | 5.690 | |
| SRR5643660 | five period of Gastrodia elata | 6.260 | |
| SRR5643661 | five period of Gastrodia elata | 3.380 | |
| SRR5643662 | five period of Gastrodia elata | 4.360 | |
| SRR5643663 | five period of Gastrodia elata | 5.640 | |
| SRR5643664 | five period of Gastrodia elata | 5.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.360 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.260 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.300 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.950 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.630 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.780 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.320 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.210 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.900 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.900 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.80 |
| Juven | Juvenile tuber | 5.23 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.39 | |
| Mother_Juven | Mother tuber of Juvenile | 6.41 |