Detail information of GWHGAAEX015243/evm.TU.scaffold_65.5
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|392396666|ref|YP_006433267.1| | 1.00E-06 | thioredoxin domain-containing protein [Flexibacter litoralis DSM 6794] |
| KOG | KOG0190 | 0 | Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) |
| nr | gi|695065248|ref|XP_009421211.1| | 0 | PREDICTED: protein disulfide isomerase-like 1-5 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q66GQ3|PDI16_ARATH | 0 | Protein disulfide isomerase-like 1-6 (Precursor) |
| trEMBL | tr|M0RIA7|M0RIA7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P14810_001} |
| TAIR | AT3G16110 | 0 | PDI-like 1-6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000063 | 209511 | 281335 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015243
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00085.19 | Thioredoxin | 68 | 168 | 1.10E-12 |
| PF13848.5 | Thioredoxin_6 | 198 | 380 | 7.20E-18 |
| PF00085.19 | Thioredoxin | 405 | 507 | 1.30E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K09580 | PDIA1, P4HB | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045454 | Biological Process | cell redox homeostasis |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 30.230 |
| SRR2545915 | Juvenile tuber | 36.870 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.250 |
| SRR5643514 | five period of Gastrodia elata | 17.850 | |
| SRR5643515 | five period of Gastrodia elata | 19.170 | |
| SRR5643524 | five period of Gastrodia elata | 18.130 | |
| SRR5643525 | five period of Gastrodia elata | 17.640 | |
| SRR5643528 | five period of Gastrodia elata | 15.140 | |
| SRR5643658 | five period of Gastrodia elata | 18.470 | |
| SRR5643659 | five period of Gastrodia elata | 18.340 | |
| SRR5643660 | five period of Gastrodia elata | 18.890 | |
| SRR5643661 | five period of Gastrodia elata | 18.240 | |
| SRR5643662 | five period of Gastrodia elata | 16.190 | |
| SRR5643663 | five period of Gastrodia elata | 17.290 | |
| SRR5643664 | five period of Gastrodia elata | 15.600 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 24.390 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.860 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 22.230 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.190 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.500 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.700 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.510 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.480 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.700 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.400 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.400 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 27.11 |
| Juven | Juvenile tuber | 29.77 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.79 | |
| Mother_Juven | Mother tuber of Juvenile | 22.60 |