Detail information of GWHGAAEX015252/evm.TU.scaffold_65.16


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|332288091|ref|YP_004418943.1|1.00E-153asparaginyl-tRNA synthetase [Gallibacterium anatis UMN179]
KOGKOG05540Asparaginyl-tRNA synthetase (mitochondrial)
nrgi|672134710|ref|XP_008791004.1|0PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Phoenix dactylifera]
Swissprottr|Q9SSK1|SYNC3_ARATH0Asparagine--tRNA ligase, cytoplasmic 3
trEMBLtr|I1NN54|I1NN54_ORYGL0Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA01G0129400.1}
TAIRAT1G709800Class II aminoacyl-tRNA and biotin synthetases superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000063889875910078+
Transcript Sequence

Network for GWHGAAEX015252

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01336.24tRNA_anti-codon531281.20E-09
PF00152.19tRNA-synt_21492113.70E-12
PF00152.19tRNA-synt_22995602.70E-62
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01893NARS, asnS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName
GO:0006421Biological Processasparaginyl-tRNA aminoacylation
GO:0006418Biological ProcesstRNA aminoacylation for protein translation
GO:0004812Molecular Functionaminoacyl-tRNA ligase activity
GO:0004816Molecular Functionasparagine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
GO:0003676Molecular Functionnucleic acid binding
GO:0000166Molecular Functionnucleotide binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms101.620
SRR2545915Juvenile tuber113.260
SRP108465SRR5643513five period of Gastrodia elata72.040
SRR5643514five period of Gastrodia elata72.420
SRR5643515five period of Gastrodia elata60.110
SRR5643524five period of Gastrodia elata68.720
SRR5643525five period of Gastrodia elata38.250
SRR5643528five period of Gastrodia elata40.410
SRR5643658five period of Gastrodia elata35.220
SRR5643659five period of Gastrodia elata42.010
SRR5643660five period of Gastrodia elata40.870
SRR5643661five period of Gastrodia elata67.220
SRR5643662five period of Gastrodia elata44.420
SRR5643663five period of Gastrodia elata39.080
SRR5643664five period of Gastrodia elata40.660
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_162.530
SRR6049655Rhizomagastrodiae_C368-T10_good_162.590
SRR6049656Rhizomagastrodiae_C368-T07_good_171.560
SRR6049657Rhizomagastrodiae_C368-T07_good_164.660
SRR6049658Rhizomagastrodiae_C368-T04_good_163.420
SRR6049659Rhizomagastrodiae_C368-T04_good_164.280
SRR6049660Rhizomagastrodiae_C368-T01_good_168.910
SRR6049661Rhizomagastrodiae_C368-T04_good_170.160
SRR6049662Rhizomagastrodiae_C368-T01_good_174.250
SRR6049663Rhizomagastrodiae_C368-T01_good_173.140
SRR6049664Rhizomagastrodiae_C368-T10_good_175.290
SRR6049665Rhizomagastrodiae_C368-T10_good_175.290
SRP279888GastroGastrodia elata tuber 63.56
JuvenJuvenile tuber67.42
Mother_GastroMother tuber of Gastrodia elata 44.74
Mother_JuvenMother tuber of Juvenile 56.80