Detail information of GWHGAAEX015253/evm.TU.scaffold_65.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672108228|ref|XP_008784061.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At1g74580 [Phoenix dactylifera] |
| Swissprot | tr|Q9CA58|PP120_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At1g74580 |
| trEMBL | tr|D7SIC2|D7SIC2_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI15232.3} |
| TAIR | AT1G74580 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000063 | 922907 | 927047 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015253
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 109 | 158 | 1.10E-11 |
| PF13041.5 | PPR_2 | 214 | 263 | 1.60E-12 |
| PF13041.5 | PPR_2 | 283 | 332 | 4.40E-19 |
| PF12854.6 | PPR_1 | 349 | 380 | 4.80E-12 |
| PF13041.5 | PPR_2 | 388 | 437 | 1.70E-16 |
| PF12854.6 | PPR_1 | 454 | 486 | 4.10E-11 |
| PF13041.5 | PPR_2 | 493 | 542 | 1.50E-17 |
| PF13041.5 | PPR_2 | 564 | 611 | 4.20E-14 |
| PF13812.5 | PPR_3 | 621 | 679 | 5.10E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.190 |
| SRR2545915 | Juvenile tuber | 10.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.620 |
| SRR5643514 | five period of Gastrodia elata | 6.550 | |
| SRR5643515 | five period of Gastrodia elata | 8.730 | |
| SRR5643524 | five period of Gastrodia elata | 7.110 | |
| SRR5643525 | five period of Gastrodia elata | 9.330 | |
| SRR5643528 | five period of Gastrodia elata | 8.380 | |
| SRR5643658 | five period of Gastrodia elata | 8.310 | |
| SRR5643659 | five period of Gastrodia elata | 12.960 | |
| SRR5643660 | five period of Gastrodia elata | 12.440 | |
| SRR5643661 | five period of Gastrodia elata | 10.960 | |
| SRR5643662 | five period of Gastrodia elata | 11.830 | |
| SRR5643663 | five period of Gastrodia elata | 12.440 | |
| SRR5643664 | five period of Gastrodia elata | 9.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.230 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.360 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.710 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.830 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.620 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.470 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.66 |
| Juven | Juvenile tuber | 13.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.48 | |
| Mother_Juven | Mother tuber of Juvenile | 19.35 |