Detail information of GWHGAAEX015254/evm.TU.scaffold_65.18


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG03042.00E-49mRNA deadenylase subunit
nrgi|698494537|ref|XP_009793461.1|4.65E-54PREDICTED: probable CCR4-associated factor 1 homolog 11 [Nicotiana sylvestris]
Swissprottr|Q9FMS6|CAF1K_ARATH5.00E-50Probable CCR4-associated factor 1 homolog 11
trEMBLtr|A0A078DHS6|A0A078DHS6_BRANA2.00E-49BnaA03g08430D protein {ECO:0000313|EMBL:CDX88806.1}
TAIRAT5G222502.00E-49Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000063939298940343+
Transcript Sequence

Network for GWHGAAEX015254

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04857.19CAF16965.90E-06
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12581CNOT7_8, CAF1, POP2 RNA degradation map03018

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.000
SRR2545915Juvenile tuber0.090
SRP108465SRR5643513five period of Gastrodia elata0.260
SRR5643514five period of Gastrodia elata1.530
SRR5643515five period of Gastrodia elata0.630
SRR5643524five period of Gastrodia elata0.910
SRR5643525five period of Gastrodia elata0.080
SRR5643528five period of Gastrodia elata0.090
SRR5643658five period of Gastrodia elata0.060
SRR5643659five period of Gastrodia elata0.070
SRR5643660five period of Gastrodia elata0.380
SRR5643661five period of Gastrodia elata0.080
SRR5643662five period of Gastrodia elata0.080
SRR5643663five period of Gastrodia elata0.230
SRR5643664five period of Gastrodia elata0.350
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.680
SRR6049655Rhizomagastrodiae_C368-T10_good_10.430
SRR6049656Rhizomagastrodiae_C368-T07_good_10.560
SRR6049657Rhizomagastrodiae_C368-T07_good_11.080
SRR6049658Rhizomagastrodiae_C368-T04_good_11.020
SRR6049659Rhizomagastrodiae_C368-T04_good_10.600
SRR6049660Rhizomagastrodiae_C368-T01_good_10.320
SRR6049661Rhizomagastrodiae_C368-T04_good_10.390
SRR6049662Rhizomagastrodiae_C368-T01_good_10.350
SRR6049663Rhizomagastrodiae_C368-T01_good_10.690
SRR6049664Rhizomagastrodiae_C368-T10_good_11.280
SRR6049665Rhizomagastrodiae_C368-T10_good_11.280
SRP279888GastroGastrodia elata tuber 0.39
JuvenJuvenile tuber0.85
Mother_GastroMother tuber of Gastrodia elata 0.74
Mother_JuvenMother tuber of Juvenile 1.30