Gene detail

Detail information of GWHGAAEX015271/evm.TU.scaffold_65.42

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|313672954\|ref\|YP_004051065.1\|	1.00E-08	nucleotidyltransferase [Calditerrivibrio nitroreducens DSM 19672]
KOG	KOG1461	2.00E-163	Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6)
nr	gi\|743836032\|ref\|XP_010935982.1\|	0	PREDICTED: translation initiation factor eIF-2B subunit epsilon [Elaeis guineensis]
trEMBL	tr\|M0SC98\|M0SC98_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P06310_001}
TAIR	AT2G34970	2.00E-163	Trimeric LpxA-like enzyme

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000063	1800532	1849467	+

Transcript Sequence
>GWHTAAEX015271 AAGCTGGGCCCACCCCGATCCAGCTTGATTCCAATCGGGCGACCAATCTGCTGCTGCTGTTGGACGAGAAGGGATAAGAGCTCTGAACACAGGATGAAAAGGTAAAGGGAGAGTGGGGCATCCCTGCTGGAAGCCTCTCCTCTCTACTATCCAATAAAGCCTGTGCTCACCAACCAAGACAGAGAACCCAGAAGACTCCACACATTGCATGACCCAGTTCGTCCAACACTGCAGGAAATCAAATCTCTCCAGAACTAAGCATGTAGGCACCCCACTTCATCCGGTTATAAGCCTGTTCCATATCCATCTCGATGGCCATGTGACCTACCGTTGAGGTGGAGTATGAGAGCTGCATAAGGATCTCCTAGACCGTGAGGTAGTTCTCATTGATATCTCTCCCGGAAACAAAGACACTCTGTTCTCGGGAGATCAAAGAAGTCAAAAACATCCATTCATTTATGCAAGCCTTTTCTTACCAATTTTAGTTTCTGAACTTGACATGCTTTTTGCATCCATTCTCTATTTAATACAAAACTCGATAGTTTTGCCTCACTTGTCCACTTCTTTATTTTTGATATTCTTAGTTCAATAAGTTTATTCATCTCAGTGAGCTAGCTTTATTCTGCTTGTATTTGCAATTGTAAGCCACCCTTGTTGACAAATGTGCTTAAATTATTACTTCATTCAGAAAAAATGAACCTTGAACTTTGGACGTCATGTAAGAATTAATCCTACTATTAATAACATTAAAGGATAGAAAGTTGGTGCTGATCTACCGGTCAATAGGCTTACTAATGTTGCATATATCTAATTCTAGGTCTTTAAAATAATAACAATTAAAGAATGATTTTGCGTCAACCTATTGTCATACTGAGCTTCCTTGGGTGATGTAGAGATGTTAAATATCTTATGGTGTGGTACAATAGCAAAGCTGTTTCATGATACCCCTTCGAGTTTTTGCTGATCAGGACTATTTTGGATGCACTGGTACTTGATATGTATTTGTGTATTTTTATTTCCAAAATGCGTTTGTAATAGAAAGCATATATTAGCCATCTAATGTTGATGAATAAAATTTATACTGAAGCATAAAATCATTGCAGCTTAATAAATAGTTCTTTTAACAGATCATGGGATACAGAATTTATACTCATGAGATTCAGTCGAGCTATGCGGCAAGAGTCGACAATTTCAGGAGTTACGATACAATTAGCAAAGACATACTTCAGAGGTGGACTTATCCTTTGGTTCCAGATGTTCAGAATTTTGGAACTGGATTGCAGATCAAGTTACAGAGAGAAGGAATTTATAAAGCACCTGATGTTGTTCAATCACGCTCTGCACATATTGATTCATTTACACTGCTTGGCAATGCAACTACTGTTGGTGATGGTACTACAATATCTAATTCAGTGATTGGTCAAGGTTGCACAATTGGGCACAATGTTACAATTGAAGGCTCATATATATGGGATAATGCCATCATTGAAGATGGTTGTAAATTAAACCATGCTCTTGTTTGTGATGGTGTTCACTTAAGAGCAGGCGTAGTTCTTGAACCTGGTGTCATATTATCTTTTAAGGTTGAAGTTGGGCAGAAAATTATGTTGCCTTCTTACTCAAAAGTTTCGCTTCTTCCACAACCATTAAAGCAAGATAGTGATGAAGAATTGGAGTATGCTGATACTAACACTGGATATATTGAAAGTGAATCATTTTCTACTATGATGAATGCTCAGAAACTGGAATCTACTTTTGGTACCTTTTATTCAGATGGTCTAGGCTCATCTGAGTATCACGTTTCTGGAGCTGGTTTTATATGGTCTTCCTGTGAGGGAGCAAATGAAGATGAATGGAGACACTCAATTGCACCAATTCCTGCTGAAAAACTTTCAGGGTTATTGCCAAATGCATTTGCTGATATTGTTGCACCAGACCAAGACATGAGCAATTTACCAGCATCTGGAGAATTGCTACCTGATTCCGAGGGTACGGTGGGTGATGGTGAAGATTATAGAGACTCTATCGATTTTGAGAAAGAGGTGGAAGCAACCTTTCAACGAGCTATTACCGGCGTGGATGTGGAAAACGTTATCCTAGAAATTAATTCATTACGACTGTCATATCATATGTCTCATGCTGATTGTGCCGGGGCATTGTTCCATTCTATTATGAAGGCAGCATTGGTACAACCCTATTCTTCTAGAAATGAATTATATTCAAATACTGTTAAGGAAATTGTCAAATGGAGGGATCTTCTCAAGAATTACCTTAAAACCTTGGATGAAGAGATTGAAGTGATTTTGAAATTTGAGGAGATTTCTATGGAAACGGCAAGAGAACTTTCTCCTTTGTTCTCTAACATTCTTAGCTTCCTTTATGACAAGGAAATTTTATCAGAGGAGGCAATTTTATCATGGGCACAAGAGAAAGAAGGTGCTGATGAGTCTGATAAGATTTTCACTAAGCAATCTGAACAGCTCATTAAGTGGTTAAGAGAAGCTCCAGAGGAAGAAGATGACTGA

Network for GWHGAAEX015271

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00132.23	Hexapep	93	126	0.00066
PF02020.17	W2	387	464	1.00E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03240	EIF2B5	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.720
SRP064423	SRR2545915	Juvenile tuber	31.270
SRP108465	SRR5643513	five period of Gastrodia elata	18.670
	SRR5643514	five period of Gastrodia elata	18.250
	SRR5643515	five period of Gastrodia elata	18.940
	SRR5643524	five period of Gastrodia elata	21.670
	SRR5643525	five period of Gastrodia elata	15.190
	SRR5643528	five period of Gastrodia elata	16.610
	SRR5643658	five period of Gastrodia elata	17.050
	SRR5643659	five period of Gastrodia elata	20.310
	SRR5643660	five period of Gastrodia elata	18.440
	SRR5643661	five period of Gastrodia elata	16.950
	SRR5643662	five period of Gastrodia elata	16.770
	SRR5643663	five period of Gastrodia elata	19.450
	SRR5643664	five period of Gastrodia elata	18.930
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	22.370
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.880
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.140
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	24.610
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.080
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	22.250
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.380
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	21.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.480
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.350
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.530
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.530
SRP279888	Gastro	Gastrodia elata tuber	33.98
	Juven	Juvenile tuber	40.00
	Mother_Gastro	Mother tuber of Gastrodia elata	24.37
	Mother_Juven	Mother tuber of Juvenile	32.08