Detail information of GWHGAAEX015272/evm.TU.scaffold_65.43
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 6.00E-157 | FOG: PPR repeat |
| nr | gi|672162074|ref|XP_008800869.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g15720 [Phoenix dactylifera] |
| Swissprot | tr|Q8VYH0|PP313_ARATH | 3.00E-164 | Pentatricopeptide repeat-containing protein At4g15720 |
| trEMBL | tr|I1IU48|I1IU48_BRADI | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI4G41840.1} |
| TAIR | AT4G15720 | 6.00E-157 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000063 | 1873546 | 1883385 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015272
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 64 | 112 | 6.00E-10 |
| PF01535.19 | PPR | 140 | 166 | 0.0031 |
| PF01535.19 | PPR | 169 | 193 | 0.0083 |
| PF01535.19 | PPR | 268 | 298 | 6.80E-05 |
| PF01535.19 | PPR | 340 | 363 | 0.033 |
| PF14432.5 | DYW_deaminase | 444 | 572 | 2.90E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.190 |
| SRR2545915 | Juvenile tuber | 0.850 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.800 |
| SRR5643514 | five period of Gastrodia elata | 4.550 | |
| SRR5643515 | five period of Gastrodia elata | 3.450 | |
| SRR5643524 | five period of Gastrodia elata | 4.030 | |
| SRR5643525 | five period of Gastrodia elata | 0.430 | |
| SRR5643528 | five period of Gastrodia elata | 0.230 | |
| SRR5643658 | five period of Gastrodia elata | 0.150 | |
| SRR5643659 | five period of Gastrodia elata | 3.400 | |
| SRR5643660 | five period of Gastrodia elata | 4.440 | |
| SRR5643661 | five period of Gastrodia elata | 4.870 | |
| SRR5643662 | five period of Gastrodia elata | 3.140 | |
| SRR5643663 | five period of Gastrodia elata | 3.770 | |
| SRR5643664 | five period of Gastrodia elata | 2.760 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.150 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.750 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.440 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.700 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.300 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.810 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.810 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.61 |
| Juven | Juvenile tuber | 5.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.11 | |
| Mother_Juven | Mother tuber of Juvenile | 1.12 |