Detail information of GWHGAAEX015274/evm.TU.scaffold_65.45
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|392411628|ref|YP_006448235.1| | 2.00E-11 | hypothetical protein Desti_3313 [Desulfomonile tiedjei DSM 6799] |
| KOG | KOG0379 | 0 | Kelch repeat-containing proteins |
| nr | gi|672162066|ref|XP_008800864.1| | 0 | PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Phoenix dactylifera] |
| Swissprot | tr|Q9MA55|ACBP4_ARATH | 0 | Acyl-CoA-binding domain-containing protein 4 |
| trEMBL | tr|M0T8N2|M0T8N2_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P20340_001} |
| TAIR | AT5G27630_2 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000063 | 1982503 | 2025961 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015274
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00887.18 | ACBP | 16 | 99 | 1.40E-17 |
| PF13854.5 | Kelch_5 | 183 | 220 | 4.90E-08 |
| PF13418.5 | Kelch_4 | 297 | 346 | 9.30E-08 |
| PF13415.5 | Kelch_3 | 359 | 404 | 3.10E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0000062 | Molecular Function | fatty-acyl-CoA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.290 |
| SRR2545915 | Juvenile tuber | 24.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 27.570 |
| SRR5643514 | five period of Gastrodia elata | 29.330 | |
| SRR5643515 | five period of Gastrodia elata | 28.780 | |
| SRR5643524 | five period of Gastrodia elata | 28.410 | |
| SRR5643525 | five period of Gastrodia elata | 31.480 | |
| SRR5643528 | five period of Gastrodia elata | 40.290 | |
| SRR5643658 | five period of Gastrodia elata | 39.920 | |
| SRR5643659 | five period of Gastrodia elata | 33.250 | |
| SRR5643660 | five period of Gastrodia elata | 32.960 | |
| SRR5643661 | five period of Gastrodia elata | 35.070 | |
| SRR5643662 | five period of Gastrodia elata | 28.790 | |
| SRR5643663 | five period of Gastrodia elata | 31.290 | |
| SRR5643664 | five period of Gastrodia elata | 30.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 25.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.740 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 26.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 22.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.580 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.460 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 23.980 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.450 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 24.890 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.230 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.230 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 32.18 |
| Juven | Juvenile tuber | 32.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 41.49 | |
| Mother_Juven | Mother tuber of Juvenile | 43.01 |