Detail information of GWHGAAEX015276/evm.TU.scaffold_65.47
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743804967|ref|XP_010927319.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q9SI53|PP147_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g03880, mitochondrial (Precursor) |
| trEMBL | tr|K3YMY5|K3YMY5_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si015619m} |
| TAIR | AT2G03880 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000063 | 2104248 | 2106382 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015276
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 135 | 182 | 2.10E-09 |
| PF01535.19 | PPR | 207 | 229 | 0.35 |
| PF01535.19 | PPR | 236 | 266 | 2.50E-07 |
| PF13041.5 | PPR_2 | 332 | 378 | 7.30E-09 |
| PF01535.19 | PPR | 407 | 432 | 0.0031 |
| PF14432.5 | DYW_deaminase | 506 | 629 | 4.30E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.630 |
| SRR2545915 | Juvenile tuber | 6.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.250 |
| SRR5643514 | five period of Gastrodia elata | 7.950 | |
| SRR5643515 | five period of Gastrodia elata | 8.230 | |
| SRR5643524 | five period of Gastrodia elata | 8.120 | |
| SRR5643525 | five period of Gastrodia elata | 7.010 | |
| SRR5643528 | five period of Gastrodia elata | 6.830 | |
| SRR5643658 | five period of Gastrodia elata | 5.890 | |
| SRR5643659 | five period of Gastrodia elata | 11.030 | |
| SRR5643660 | five period of Gastrodia elata | 11.050 | |
| SRR5643661 | five period of Gastrodia elata | 11.430 | |
| SRR5643662 | five period of Gastrodia elata | 11.030 | |
| SRR5643663 | five period of Gastrodia elata | 10.330 | |
| SRR5643664 | five period of Gastrodia elata | 8.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.460 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.790 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.710 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.200 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.560 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.380 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.070 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.970 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.970 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.99 |
| Juven | Juvenile tuber | 8.57 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.18 | |
| Mother_Juven | Mother tuber of Juvenile | 7.83 |