Detail information of GWHGAAEX015278/evm.TU.scaffold_65.50
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|521467107|ref|YP_008154472.1| | 5.00E-08 | hypothetical protein SCE1572_40550 [Sorangium cellulosum So0157-2] |
| KOG | KOG0379 | 1.00E-140 | Kelch repeat-containing proteins |
| nr | gi|695002773|ref|XP_009381939.1| | 1.44E-150 | PREDICTED: acyl-CoA-binding domain-containing protein 4 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9MA55|ACBP4_ARATH | 1.00E-138 | Acyl-CoA-binding domain-containing protein 4 |
| trEMBL | tr|M0S4H5|M0S4H5_MUSAM | 5.00E-151 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P02340_001} |
| TAIR | AT3G05420_2 | 1.00E-140 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000063 | 2134186 | 2142219 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015278
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13854.5 | Kelch_5 | 54 | 91 | 1.70E-08 |
| PF13418.5 | Kelch_4 | 174 | 218 | 9.40E-06 |
| PF13415.5 | Kelch_3 | 232 | 277 | 2.10E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.190 |
| SRR2545915 | Juvenile tuber | 3.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.210 |
| SRR5643514 | five period of Gastrodia elata | 0.390 | |
| SRR5643515 | five period of Gastrodia elata | 0.100 | |
| SRR5643524 | five period of Gastrodia elata | 0.090 | |
| SRR5643525 | five period of Gastrodia elata | 0.620 | |
| SRR5643528 | five period of Gastrodia elata | 0.210 | |
| SRR5643658 | five period of Gastrodia elata | 0.870 | |
| SRR5643659 | five period of Gastrodia elata | 0.420 | |
| SRR5643660 | five period of Gastrodia elata | 0.280 | |
| SRR5643661 | five period of Gastrodia elata | 0.380 | |
| SRR5643662 | five period of Gastrodia elata | 0.090 | |
| SRR5643663 | five period of Gastrodia elata | 0.280 | |
| SRR5643664 | five period of Gastrodia elata | 0.090 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.310 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.560 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.630 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.260 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.440 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.430 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.430 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.71 |
| Juven | Juvenile tuber | 2.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.44 | |
| Mother_Juven | Mother tuber of Juvenile | 1.37 |