Detail information of GWHGAAEX015282/evm.TU.scaffold_65.58
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146298365|ref|YP_001192956.1| | 5.00E-19 | two component regulator [Flavobacterium johnsoniae UW101] |
| KOG | KOG0619 | 2.00E-79 | FOG: Leucine rich repeat |
| nr | gi|743771700|ref|XP_010916143.1| | 2.45E-117 | PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL1 [Elaeis guineensis] |
| Swissprot | tr|Q00874|DR100_ARATH | 5.00E-31 | DNA-damage-repair/toleration protein DRT100 (Precursor) |
| trEMBL | tr|K3XX40|K3XX40_SETIT | 2.00E-106 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si006498m} |
| TAIR | AT3G17640 | 2.00E-79 | Leucine-rich repeat (LRR) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000063 | 2423492 | 2424949 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015282
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 31 | 71 | 1.30E-05 |
| PF00560.32 | LRR_1 | 157 | 176 | 0.68 |
| PF00560.32 | LRR_1 | 250 | 269 | 1.2 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.160 |
| SRR2545915 | Juvenile tuber | 0.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.740 |
| SRR5643514 | five period of Gastrodia elata | 4.490 | |
| SRR5643515 | five period of Gastrodia elata | 7.130 | |
| SRR5643524 | five period of Gastrodia elata | 2.630 | |
| SRR5643525 | five period of Gastrodia elata | 0.440 | |
| SRR5643528 | five period of Gastrodia elata | 1.940 | |
| SRR5643658 | five period of Gastrodia elata | 3.320 | |
| SRR5643659 | five period of Gastrodia elata | 0.650 | |
| SRR5643660 | five period of Gastrodia elata | 0.100 | |
| SRR5643661 | five period of Gastrodia elata | 0.460 | |
| SRR5643662 | five period of Gastrodia elata | 0.100 | |
| SRR5643663 | five period of Gastrodia elata | 0.080 | |
| SRR5643664 | five period of Gastrodia elata | 0.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.410 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 24.760 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.810 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.090 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.660 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.160 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.930 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.010 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.800 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.500 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.650 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.650 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.02 |
| Juven | Juvenile tuber | 0.45 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.69 | |
| Mother_Juven | Mother tuber of Juvenile | 0.21 |