Gene detail

Detail information of GWHGAAEX015287/evm.TU.scaffold_65.70

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0037	4.00E-89	Ca2+-binding protein, EF-Hand protein superfamily
nr	gi\|695051036\|ref\|XP_009413529.1\|	4.32E-126	PREDICTED: probable calcium-binding protein CML49 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q8W4L0\|CML49_ARATH	1.00E-117	Probable calcium-binding protein CML49
trEMBL	tr\|M0TR65\|M0TR65_MUSAM	2.00E-126	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P17120_001}
TAIR	AT3G10300	4.00E-89	Calcium-binding EF-hand family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000063	2607065	2626346	+

Transcript Sequence
>GWHTAAEX015287 GTTTTCATATAAAGCCAACGGCCCACCTCAAACCTGACTGTCCCAATCTGTCTCTCCATTCCAGCAGTATCTCCTCGTTTCTCTATCTGCTTTAATGGCTGGCTATCCACAAGGCTCCGGTTATCCCCAAGGCTCTGGTTATCCCCAAGGCTCCGGTTATCCCTACGGCGCGCCTCCGGCGAATCCATACGCCTCCGCTCCGCCTTACGGATCCGTCCCTCCGCAACCCTACGGCGCCGCGCAGCCGCAACCGCACGTCTACGGCGCCCATCAGCCATCGGCGCCGCAGTCCAAGCCCGAGAAACCAGGGAAGGAACATGCAAGCGGCTGCGGTTACGAGCATCCCCCTCCTTCTGCCGCATATGGCGCGGCGAGCCCTTTTTCGGCCCTTCTGCCTTCGCAATTCCCCCCTGGTACGGATCCGAGCCTCGTGGCTTGCTTCCAGATGGCTGATCAGGACGGCAGCGGTCTGATCGATGACAAGGAGCTGCAGCGCGCTCTCTCATCCTACAACCAGGGATTCAGCCTCCGCACTGTTCACCTCCTTATGTATCTCTTCACATCTTCCAACATCCGCAAGATCGGTCCAAAGGAATTCACCGCAGTATTCTACAGCCTTCAGAACTGGAGGGGGATCTTTGAGAAGTTCGATCGGGATCGAAGCGGGAAGATCGACGCATTGGAACTTCGGGAAGCCCTTCTGAGCATCGGCTATGCGGTTCCTCCCGCGGTGCTCGACCTGCTTCTCTCCAAGTTCGATAAAAGCGGCGGCAAAATCAAGGCCATCGAATACGACAACTTCATTGAGTGCTGCCTCACTGTCAAGGGTTTGACAGAGAAGTTCAAGGAGAAGGACACCATGTACAGCGGATCTGCTACTTTCACTTATGAATCCTTCATGCTGACCGTTCTCCCATTCCTCATTGCTTAGTGAGTCATCTGAAATGCTGCTGCTTAGTGAGAGTCATCTGAAATAAAGCAGAGTGAGTTCATAGAAAGTAGTTCTATCATGAGTCAGTTTCACTTAAAAATAAGTTATGGGATGAAATGTTAAGATTATGTATAATATAAGGTTCGTTTTCTTCTTGCACTTTTGCTTATGGATTCTATCATCCCTCTTTTTTCACTTCTAAGAGTTATTGGGGCAAAACTTGAAAGTAAAGTACCATTTTTTTCTTCATATAAATTGTAAAATTCATTGCTAGATTAACTAGGAAAGCTATATCGTTATAATCAAGCATGGTTGCTAAACT

Network for GWHGAAEX015287

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13202.5	EF-hand_5	112	134	0.00013
PF13405.5	EF-hand_6	178	203	1.20E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13448	CML	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005509	Molecular Function	calcium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	244.130
SRP064423	SRR2545915	Juvenile tuber	229.560
SRP108465	SRR5643513	five period of Gastrodia elata	134.320
	SRR5643514	five period of Gastrodia elata	129.030
	SRR5643515	five period of Gastrodia elata	144.560
	SRR5643524	five period of Gastrodia elata	139.920
	SRR5643525	five period of Gastrodia elata	245.410
	SRR5643528	five period of Gastrodia elata	272.910
	SRR5643658	five period of Gastrodia elata	207.590
	SRR5643659	five period of Gastrodia elata	113.940
	SRR5643660	five period of Gastrodia elata	106.480
	SRR5643661	five period of Gastrodia elata	92.420
	SRR5643662	five period of Gastrodia elata	108.430
	SRR5643663	five period of Gastrodia elata	96.720
	SRR5643664	five period of Gastrodia elata	120.940
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	206.180
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	269.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	207.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	181.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	169.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	184.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	154.690
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	190.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	193.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	182.160
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	232.060
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	232.060
SRP279888	Gastro	Gastrodia elata tuber	116.99
	Juven	Juvenile tuber	131.69
	Mother_Gastro	Mother tuber of Gastrodia elata	191.77
	Mother_Juven	Mother tuber of Juvenile	143.38