Detail information of GWHGAAEX015288/evm.TU.scaffold_65.71
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|217979161|ref|YP_002363308.1| | 2.00E-16 | fatty acid hydroxylase [Methylocella silvestris BL2] |
| KOG | KOG0539 | 2.00E-33 | Sphingolipid fatty acid hydroxylase |
| nr | gi|695073698|ref|XP_009384024.1| | 4.17E-34 | PREDICTED: fatty acid 2-hydroxylase 1-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O48916|FAH1_ARATH | 6.00E-34 | Fatty acid 2-hydroxylase 1 |
| trEMBL | tr|M0RSX4|M0RSX4_MUSAM | 2.00E-34 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P16940_001} |
| TAIR | AT2G34770 | 2.00E-33 | fatty acid hydroxylase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000063 | 2628271 | 2667452 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015288
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04116.12 | FA_hydroxylase | 78 | 161 | 5.10E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008610 | Biological Process | lipid biosynthetic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0005506 | Molecular Function | iron ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 104.380 |
| SRR2545915 | Juvenile tuber | 114.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.730 |
| SRR5643514 | five period of Gastrodia elata | 8.020 | |
| SRR5643515 | five period of Gastrodia elata | 3.460 | |
| SRR5643524 | five period of Gastrodia elata | 7.770 | |
| SRR5643525 | five period of Gastrodia elata | 1.110 | |
| SRR5643528 | five period of Gastrodia elata | 0.090 | |
| SRR5643658 | five period of Gastrodia elata | 0.260 | |
| SRR5643659 | five period of Gastrodia elata | 2.180 | |
| SRR5643660 | five period of Gastrodia elata | 0.770 | |
| SRR5643661 | five period of Gastrodia elata | 0.700 | |
| SRR5643662 | five period of Gastrodia elata | 0.390 | |
| SRR5643663 | five period of Gastrodia elata | 0.240 | |
| SRR5643664 | five period of Gastrodia elata | 0.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 23.850 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.730 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.530 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.530 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.940 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 1.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.90 | |
| Mother_Juven | Mother tuber of Juvenile | 0.54 |