Gene detail

Detail information of GWHGAAEX015300/evm.TU.scaffold_65.87

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|375013701\|ref\|YP_004990689.1\|	citrate (Si)-synthase [Owenweeksia hongkongensis DSM 17368]
KOG	KOG2617	Citrate synthase
nr	gi\|672119229\|ref\|XP_008782846.1\|	PREDICTED: citrate synthase, mitochondrial [Phoenix dactylifera]
Swissprot	tr\|O80433\|CISY_DAUCA	Citrate synthase, mitochondrial (Precursor)
trEMBL	tr\|D7TNT9\|D7TNT9_VITVI	Citrate synthase {ECO:0000256\|RuleBase:RU000441}
TAIR	AT2G44350	Citrate synthase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000063	3206108	3250779	-

Transcript Sequence
>GWHTAAEX015300 ATAAACCCCTTGGGATATTGGGATAGACCAATTGTTACCTTTTTTTATTTTCTTGCGCATCGTGGTGTCTTTTTGACGTACCAAGAATCTCGTTGCACATAACCTAATGGCGGCGATGCGGAGGGCTCTGCTGAAGCAGCTGAGGGTGATAGCCGGCCGTCCTCTTCAGCCGCCGGTAACGCTCACTTGCTCTCAACTCCAACGCTGCCCCTTTTCGGAGGACGCCAAGGGCTCTTTACTTGACAAATCCGAGACCACTAATACCCTTTTCAAAAACTCTCAGAATGCCGATTCCTCCAAGGATCTGCGTTCTCAACTAGAGGAGCTGATTCCAGAACAAAAAGAACGGCTGAAAAAATTGAAAACTGATTTTGCTAAAGTTCAGCTGGGGAACATCACGGTTGATATGGTTATGGGTGGAATGCGAGGAATGACTGGCTTGCTATGGGAAACTTCATTACTTGATCCAGAAGAGGGTATTCGTTTTAGGGGGCTTTCTATTCCCGAATGCCAAAAGCTGCTACCTGCTGCAAGTCCTGAAGGAGAGCCCCTGCCTGAAGGTCTCTTGTGGCTGCTCTTGACTGGGAAGGTGCCAACTAGAGACCAAGTTGATGCCCTATCTAAGGAGTTGCATAGCCGCTCTACAGTCCCAGACCATGTTTATAAAGCAATTGATTCTCTCCCATTATCTGCTCATCCAATGACTCAATTTACAACTGGTGTTATGGCTCTTCAGGTTCAGAGCGAATTCCAGAAAGCATATGAAAATGGAATTTCTAAAGCAAAGTTCTGGGAACCTACATATGAGGATTCTCTGAATTTAATTGCTCAGGCTCCTGTGGTGGCATCTTATATATATGGAAGGGTGTATAAAAACGGGCAAATCATTTCTGCTGACAAATCTTTGGATTATGGTGCAAATTTTTCTCGCATGCTTGGATTTGGTGATACAAAAATGGAGGAGTTGATGAGGCTCTATTTAACAATCCACAGCGATCATGAAGGGGGAAATGTGAGTGCTCACACTGCTCATCTGGTTGCAAGCGCGCTTTCAGATCCTTATCTTTCATTTGGTGCTGCACTGAATGGACTTGCAGGACCTCTTCATGGCTTGGCTAATCAGGAAGTACTGCTATGGATCAAAGCTGTTGTTGAAGAGTGTGGTGAAAACATATCAATTGAGCAGCTGAAGGAGTATGTATGGAAAACGTTGAAAAGTGGAAAGGTTGTTCCTGGATACGGTCATGGTGTACTACGTAAAACAGATCCAAGATACACATGCCAGAGGGAGTTTGCATTAAAACACTTACCTGATGATCCTCTTTTCCAGCTGGTCTCAAAACTGTATAAAGTTGTTCCTCCTATACTCACTGAGCTTGGAAAGGTCAAAAACCCATGGCCCAACGTCGATGCGCATAGCGGTGTCCTGCTTAACCATTTTGGCCTAACCGAAGCAAGATATTTTACTGTACTTTTTGGGGTCTCCAGAAGCATTGGCATATGCTCCCAGTTGATCTGGGATCGAGCTCTCGGCTTGCCTCTTGAAAGGCCAAAGAGCGTGACTATGGAATGGCTTGAGAATCATTGCAAGAAGGCTGCCGTCTGAACTCCCTGCGCTAATATAACTGGTCAGTGGAATTTCACCCGCATGCTTTTATATTTCTATCTATTTTTTACAACTGCTTGAAACTGGATTGACCGGTAAATTGGATTAATTTATTATTTATGTATCCAAAATAAGCCATCCTTCATTTTTCCTCCCCCCCATGCGTCGGATGCATCATCGTTCATTATTCAATAATGTTTACTTGAATTATCCATTAATTCATTTGTATGTAGTCTTAAAGATCTTTGAAGTGATGAAAGGAAAAAGTTTAAAATATTATTTATTTTATAAATTCAAATATTTATGCCATCTTGAATTTCCTGTAACTTCGTTCTGCTGCCTAAATTGCATCTTGATTTGTAACATTTTGATCAGATAAAAAACATTATTAATGTTGAA

Network for GWHGAAEX015300

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00285.20	Citrate_synt	105	483	1.10E-102

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01647	CS, gltA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of antibiotics	map01130
		Carbon metabolism	map01200
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Citrate cycle (TCA cycle)	map00020
		Glyoxylate and dicarboxylate metabolism	map00630

Gene Ontology

GO term	Ontology	Name
GO:0006099	Biological Process	tricarboxylic acid cycle
GO:0006101	Biological Process	citrate metabolic process
GO:0046912	Molecular Function	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
GO:0004108	Molecular Function	citrate (Si)-synthase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	43.870
SRP064423	SRR2545915	Juvenile tuber	57.470
SRP108465	SRR5643513	five period of Gastrodia elata	61.630
	SRR5643514	five period of Gastrodia elata	79.540
	SRR5643515	five period of Gastrodia elata	58.600
	SRR5643524	five period of Gastrodia elata	77.520
	SRR5643525	five period of Gastrodia elata	54.040
	SRR5643528	five period of Gastrodia elata	67.970
	SRR5643658	five period of Gastrodia elata	49.350
	SRR5643659	five period of Gastrodia elata	51.370
	SRR5643660	five period of Gastrodia elata	51.000
	SRR5643661	five period of Gastrodia elata	55.040
	SRR5643662	five period of Gastrodia elata	43.770
	SRR5643663	five period of Gastrodia elata	47.670
	SRR5643664	five period of Gastrodia elata	38.320
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	57.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	84.860
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	71.180
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	53.750
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	50.410
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	50.750
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	57.490
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	55.620
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	91.400
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	70.730
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	100.180
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	100.180
SRP279888	Gastro	Gastrodia elata tuber	50.49
	Juven	Juvenile tuber	54.48
	Mother_Gastro	Mother tuber of Gastrodia elata	60.65
	Mother_Juven	Mother tuber of Juvenile	69.64