Detail information of GWHGAAEX015313/evm.TU.scaffold_65.99
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|538392614|ref|YP_008514187.1| | 1.00E-09 | RNA recognition motif-containing protein [Variovorax paradoxus B4] |
| KOG | KOG0118 | 9.00E-83 | FOG: RRM domain |
| nr | gi|743807440|ref|XP_010928098.1| | 2.59E-135 | PREDICTED: RNA-binding protein cabeza-like [Elaeis guineensis] |
| Swissprot | tr|Q9LIS2|RBG4_ARATH | 3.00E-07 | Glycine-rich RNA-binding protein 4, mitochondrial (Precursor) |
| trEMBL | tr|M0U849|M0U849_MUSAM | 2.00E-103 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP10900_001} |
| TAIR | AT5G55670 | 9.00E-83 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000063 | 3575511 | 3601690 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015313
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 202 | 270 | 2.60E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14398 | CPSF6_7 | mRNA surveillance pathway | map03015 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.510 |
| SRR2545915 | Juvenile tuber | 7.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.120 |
| SRR5643514 | five period of Gastrodia elata | 10.490 | |
| SRR5643515 | five period of Gastrodia elata | 10.330 | |
| SRR5643524 | five period of Gastrodia elata | 11.250 | |
| SRR5643525 | five period of Gastrodia elata | 10.040 | |
| SRR5643528 | five period of Gastrodia elata | 10.290 | |
| SRR5643658 | five period of Gastrodia elata | 10.850 | |
| SRR5643659 | five period of Gastrodia elata | 13.670 | |
| SRR5643660 | five period of Gastrodia elata | 11.120 | |
| SRR5643661 | five period of Gastrodia elata | 11.760 | |
| SRR5643662 | five period of Gastrodia elata | 13.390 | |
| SRR5643663 | five period of Gastrodia elata | 9.570 | |
| SRR5643664 | five period of Gastrodia elata | 10.410 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.190 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.120 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.560 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.790 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.820 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.820 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.74 |
| Juven | Juvenile tuber | 8.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.52 | |
| Mother_Juven | Mother tuber of Juvenile | 8.75 |