Detail information of GWHGAAEX015315/evm.TU.scaffold_65.102
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|85860043|ref|YP_462245.1| | 7.00E-41 | sir2 family protein [Syntrophus aciditrophicus SB] |
| KOG | KOG1905 | 0 | Class IV sirtuins (SIR2 family) |
| nr | gi|743861477|ref|XP_010943290.1| | 0 | PREDICTED: NAD-dependent protein deacetylase SRT1 isoform X2 [Elaeis guineensis] |
| Swissprot | tr|B8ARK7|SIR1_ORYSI | 0 | NAD-dependent protein deacetylase SRT1 |
| trEMBL | tr|M0TTA0|M0TTA0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P24470_001} |
| TAIR | AT5G55760 | 0 | sirtuin 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000063 | 3691947 | 3767547 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015315
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02146.16 | SIR2 | 52 | 75 | 2.40E-05 |
| PF02146.16 | SIR2 | 87 | 216 | 1.20E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11416 | SIRT6, SIR2L6 | Metabolic pathways | map01100 |
| Nicotinate and nicotinamide metabolism | map00760 | ||
| Thermogenesis | map04714 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0070403 | Molecular Function | NAD+ binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.230 |
| SRR2545915 | Juvenile tuber | 5.060 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.240 |
| SRR5643514 | five period of Gastrodia elata | 6.190 | |
| SRR5643515 | five period of Gastrodia elata | 6.660 | |
| SRR5643524 | five period of Gastrodia elata | 6.220 | |
| SRR5643525 | five period of Gastrodia elata | 6.350 | |
| SRR5643528 | five period of Gastrodia elata | 8.240 | |
| SRR5643658 | five period of Gastrodia elata | 7.350 | |
| SRR5643659 | five period of Gastrodia elata | 4.710 | |
| SRR5643660 | five period of Gastrodia elata | 5.240 | |
| SRR5643661 | five period of Gastrodia elata | 5.170 | |
| SRR5643662 | five period of Gastrodia elata | 4.860 | |
| SRR5643663 | five period of Gastrodia elata | 4.340 | |
| SRR5643664 | five period of Gastrodia elata | 4.610 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.820 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.120 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.360 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.440 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.260 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.260 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.21 |
| Juven | Juvenile tuber | 3.44 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.81 | |
| Mother_Juven | Mother tuber of Juvenile | 4.19 |