Gene detail

Detail information of GWHGAAEX015316/evm.TU.scaffold_65.103

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|254786409\|ref\|YP_003073838.1\|	4.00E-35	oxidoreductase, 2OG-Fe(II) oxygenase family [Teredinibacter turnerae T7901]
nr	gi\|672177307\|ref\|XP_008808743.1\|	9.48E-115	PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 2-like [Phoenix dactylifera]
Swissprot	tr\|Q9SIE0\|ALKB2_ARATH	1.00E-102	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2
trEMBL	tr\|B9FSS7\|B9FSS7_ORYSJ	1.00E-112	Putative uncharacterized protein {ECO:0000313\|EMBL:EEE65538.1}
TAIR	AT2G22260	1.00E-99	oxidoreductase, 2OG-Fe(II) oxygenase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000063	3768629	3773832	-

Transcript Sequence
>GWHTAAEX015316 GTTTGTGAGATGATTTGAAAGTTTTATAGTACATTTTGAAGCATGAAAAAGGGATTTATAGGCTAAAAAGAGAGGGTTCATACATGAAATAAGTTGAATTGGCATATTTTAAAGCACCTGTGTAGATTTTATGATGCATCTATTTGGAGATATGATATATGGGAAGCAATTTATTGATTTAACTAAGTGTGCTTGAGTGCCCTTTATGGTGCGCTTGGGCTGGGGCTCCTAGCATCAACACTAGCTTTGAGTATCCTAACTAACTCTGAATAATCCATCATCTCTCTCAAACTTTAGCTAATCTTATTTTAAAACTATTATAGCATGAACACATGATAAATATTTTGTTAATAATTTTCTTCACTAAAGTTACGTGCCACTTTGTCCATGTTAATATTATTTCAACATAAATTATCAATTTTCGAATTTTTATTTTTTGTTTAATCTGATATTAAGCTGATTTTATGTAGGTTGCTTTTCTCTCTCCGTCTTCACTTTTTCTTTTATACTCCTTGCTTTCTTTATCTGCTGCTATCAGCACTAAATTAAAATAAGAGGTGCAAACATCCCATACTTGACTGGTCGCGAAGCCCGCCATGCGCTGCAGGCTTCGTGGATTCGAAGCGGCAAAACCAAACCCTAATCCAGAGTCCAGCCCTCGCAGGAGCGAAGGAAGACGATCAATCACCGATCTCGGAAGTGGAAGCGTAGTAATCCATGTTCCTAGATTCTTGCCGTCCGAAAGAGCATGGGCATGGTTCGACTATCTCGACAAGGAGATCCCATGGACGAGGCCAACACTCCGCGTCTTCGGAAGGTCATGCCTTCAGCCAAGAGACACATTCTATGTCGCAAGTGAAGGACTTGCTGATCTAAAATATAGCGGGTATCAGCCACCTGCACACACCTGGGATCAATACCCTGTGCTTATGGACATTTTGCAAGCAGTTCATGCAGCTCTTCCTGGAAGCAGATTCAACAGTTTGCTCCTGAATAGATATAAGAGCGGGGCAGATTATGTTGCTTGGCATTCTGACGATGAAAAATTGTACGGATCCACGCCGGAAATTGCATCTGTTTCTCTTGGATGCGAGCGGGAGTTTGTTTTGAGGAAGAAATCAGTCAAGGGAGAAGAAGAAGGGCAGAGGAATAAGAGGATGAAGCGGAGCTGGGAGGAACAGAGATCGTTCATGTTGAAGCATGGGTCCCTGCTGGTTATGAGAGGATATACACAGCGGGATTGGATTCATTCTGTTCCAAAGCGCGCAAAATCAGACTCTGTAAGGATCAATCTTACTTTCAGGAACATCGTCGTCTAGACATTTCACTCTATCCTCCTGTGATAGATCAAACTGAGACGGTTTCTACTGAATTTGATTGTGAGGGTCAGAGCAAACATCAAATTAAGTGTTCTTGCAAATTAAGTTAGGTAAACATAATGATAAAACCCCCAATCACACCAATATACCAACCTTTTTTTGGTTCTATTACTTTTTGTGATGTTCTTCAGCACCCAAAACCTGCTGATCAACAGAAATCTTGACAACATTACATGTTTTTGCTGAGCATGGGCTCTGCTGGTGATGAGAGGATATACACAGCAGGATTGGATTCACTCTGTTTCGAAGTGCGCAAAATCAGATATGTGTGAGGATCAAACTTACTTTCAGGAACAAATTCTTTGGCTAAGCTCTGTGGCAAATCTTTTGTTGAAGAGTTTTGTCAAGATTTGTGTCGATTAGCTGGTTTTGAAGTTGGGTGCTGAAGAATGTTTCAAAGAGCAATCAAATAGCCAAAGAAATGGTTGGAATATGTTTGCCTAACTTGCAAGAACATGTAAGTTGATATTTGCGCACTTAATTTCACTCTATTCTCCTGTGATAGATAAGATCTGTGTACAAGTCATCACCTACATGCATTTTACACACTTTTGAATACAAGCATGAAGTTATATTCCTAGATAGCCTTTATTATTCACAACTATAGCAT

Network for GWHGAAEX015316

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13532.5	2OG-FeII_Oxy_2	40	236	7.30E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0016491	Molecular Function	oxidoreductase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	26.330
SRP064423	SRR2545915	Juvenile tuber	10.620
SRP108465	SRR5643513	five period of Gastrodia elata	9.310
	SRR5643514	five period of Gastrodia elata	7.010
	SRR5643515	five period of Gastrodia elata	6.500
	SRR5643524	five period of Gastrodia elata	7.900
	SRR5643525	five period of Gastrodia elata	10.760
	SRR5643528	five period of Gastrodia elata	12.030
	SRR5643658	five period of Gastrodia elata	11.130
	SRR5643659	five period of Gastrodia elata	9.150
	SRR5643660	five period of Gastrodia elata	13.660
	SRR5643661	five period of Gastrodia elata	11.150
	SRR5643662	five period of Gastrodia elata	11.590
	SRR5643663	five period of Gastrodia elata	10.380
	SRR5643664	five period of Gastrodia elata	10.940
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.740
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.320
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.760
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.930
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.420
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.000
SRP279888	Gastro	Gastrodia elata tuber	17.99
	Juven	Juvenile tuber	13.89
	Mother_Gastro	Mother tuber of Gastrodia elata	13.80
	Mother_Juven	Mother tuber of Juvenile	10.62