Gene detail

Detail information of GWHGAAEX015317/evm.TU.scaffold_65.104

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|117925170\|ref\|YP_865787.1\|	6.00E-16	acyl carrier protein [Magnetococcus marinus MC-1]
KOG	KOG1748	5.00E-51	Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit
nr	gi\|672129950\|ref\|XP_008788498.1\|	1.21E-58	PREDICTED: acyl carrier protein 1, mitochondrial-like [Phoenix dactylifera]
Swissprot	tr\|P53665\|ACPM1_ARATH	2.00E-51	Acyl carrier protein 1, mitochondrial (Precursor)
trEMBL	tr\|D7SM49\|D7SM49_VITVI	3.00E-55	Acyl carrier protein {ECO:0000256\|RuleBase:RU000722}
TAIR	AT2G44620	5.00E-51	mitochondrial acyl carrier protein 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000063	3775080	3776023	+

Transcript Sequence
>GWHTAAEX015317 CTCAAATTAAAGTGTACTTAAAATTAAGTGGAACCACTTTAAAACCAAAGACACCGATTCGCGTTTCTTTTCTGGGAACGAGGACAGAGATGGCGGTTGCGCTGCGGCTTGCGATTCTTCGCCACATTCGAATCCCTGTCCAAGCTCTAGATCGACTGCGGTCGCCATCGGCGTCGTGGAATCCTTACAGTGGCCAGAACCGATCGCTTTCATCCCATGGCGACGAACATCTGGAACGGGAGGAGGTTGTCGAGCGCGTCCTCTCGGTTGTCAAGAGCTTCCCGAAGCTCGATTCCTTGAAGGTAACCATGGATTCCCACTTTCAGAAGGATTTGGGCCTGGACAGCCTTGACAACGTAGAGATAGTGATGGCGCTTGAGGAAGAATTCAAGCTCGAGATCCCCGACAAGGAAGCCGACAAGATCGACTCCTGCAGTGGCGCTATTGAGTACATTTTAAACCATCCCATGTCTGTCTAATTCTTAGGTTTTTGGCTGGGAAGCATAAAAAAGTGGAATGCGCTTGTTTGTTATTGCTGGTTCCATCGTTTAGCTTCAGCATCGCAAGCGTTGGCTTGATTTTAAGAATGTGGGTTTCCCTTCCTGATAAGCAATTCTGGAGGGAATCTTAAATAATGGCATCATGTCGAGCATGTTACTTTCAAGCTAAAACATTGCAATTTAAGATGTTGATTTTGCTTAAACTCTTTTTGGGAATGAGCACTATGTTTGTCCCAATTCTGAAACAACGTTTCTGTATCTTTTTTCTACATTTATGGGGATCAATTGCTTATGCAATCAGGCTATTATCCCGGATGAAAATAAATGATCATATGGTGTGATGAACAACAAGGGTATTCTTTGAACTTGAGCCTCC

Network for GWHGAAEX015317

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00550.24	PP-binding	56	116	1.00E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03955	NDUFAB1	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Retrograde endocannabinoid signaling	map04723
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0006633	Biological Process	fatty acid biosynthetic process

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	101.640
SRP064423	SRR2545915	Juvenile tuber	94.330
SRP108465	SRR5643513	five period of Gastrodia elata	123.530
	SRR5643514	five period of Gastrodia elata	159.460
	SRR5643515	five period of Gastrodia elata	119.440
	SRR5643524	five period of Gastrodia elata	128.950
	SRR5643525	five period of Gastrodia elata	153.420
	SRR5643528	five period of Gastrodia elata	108.760
	SRR5643658	five period of Gastrodia elata	126.000
	SRR5643659	five period of Gastrodia elata	120.900
	SRR5643660	five period of Gastrodia elata	126.390
	SRR5643661	five period of Gastrodia elata	127.020
	SRR5643662	five period of Gastrodia elata	115.950
	SRR5643663	five period of Gastrodia elata	117.080
	SRR5643664	five period of Gastrodia elata	151.910
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	191.920
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	198.790
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	193.760
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	175.300
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	153.140
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	134.970
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	169.990
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	164.660
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	152.420
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	157.950
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	185.810
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	185.810
SRP279888	Gastro	Gastrodia elata tuber	125.71
	Juven	Juvenile tuber	120.88
	Mother_Gastro	Mother tuber of Gastrodia elata	65.41
	Mother_Juven	Mother tuber of Juvenile	58.06