Detail information of GWHGAAEX015321/evm.TU.scaffold_65.110


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG44302.00E-44Topoisomerase I-binding arginine-serine-rich protein
nrgi|720006189|ref|XP_010257899.1|2.04E-96PREDICTED: uncharacterized protein LOC104597855 isoform X1 [Nelumbo nucifera]
Swissprottr|Q9SGH2|MBD9_ARATH3.00E-09Methyl-CpG-binding domain-containing protein 9
trEMBLtr|A0A022RCS5|A0A022RCS5_ERYGU1.00E-93Uncharacterized protein {ECO:0000313|EMBL:EYU38152.1}
TAIRAT3G056702.00E-44RING/U-box protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006339001873934605-
Transcript Sequence

Network for GWHGAAEX015321

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_235761.60E-08
PF00628.28PHD1251691.20E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPHD
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.830
SRR2545915Juvenile tuber10.630
SRP108465SRR5643513five period of Gastrodia elata4.950
SRR5643514five period of Gastrodia elata5.900
SRR5643515five period of Gastrodia elata5.950
SRR5643524five period of Gastrodia elata5.260
SRR5643525five period of Gastrodia elata11.620
SRR5643528five period of Gastrodia elata9.090
SRR5643658five period of Gastrodia elata10.780
SRR5643659five period of Gastrodia elata6.700
SRR5643660five period of Gastrodia elata6.260
SRR5643661five period of Gastrodia elata5.700
SRR5643662five period of Gastrodia elata7.930
SRR5643663five period of Gastrodia elata6.490
SRR5643664five period of Gastrodia elata7.870
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.130
SRR6049655Rhizomagastrodiae_C368-T10_good_16.640
SRR6049656Rhizomagastrodiae_C368-T07_good_117.090
SRR6049657Rhizomagastrodiae_C368-T07_good_116.500
SRR6049658Rhizomagastrodiae_C368-T04_good_127.100
SRR6049659Rhizomagastrodiae_C368-T04_good_130.560
SRR6049660Rhizomagastrodiae_C368-T01_good_119.020
SRR6049661Rhizomagastrodiae_C368-T04_good_126.820
SRR6049662Rhizomagastrodiae_C368-T01_good_110.820
SRR6049663Rhizomagastrodiae_C368-T01_good_119.750
SRR6049664Rhizomagastrodiae_C368-T10_good_18.530
SRR6049665Rhizomagastrodiae_C368-T10_good_18.530
SRP279888GastroGastrodia elata tuber 6.29
JuvenJuvenile tuber6.10
Mother_GastroMother tuber of Gastrodia elata 11.55
Mother_JuvenMother tuber of Juvenile 8.87