Gene detail

Detail information of GWHGAAEX015323/evm.TU.scaffold_65.112

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1305	Amino acid transporter protein
nr	gi\|743807125\|ref\|XP_010927988.1\|	PREDICTED: sodium-coupled neutral amino acid transporter 2-like [Elaeis guineensis]
trEMBL	tr\|M0TTA1\|M0TTA1_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P24480_001}
TAIR	AT3G30390	Transmembrane amino acid transporter family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000063	3972649	3996015	-

Transcript Sequence
>GWHTAAEX015323 TTCATCATCTACTTCTTAATCTACTTATTTGTCTTGGGATCGATCGATCATTTTTTTAGCGAACGCGAGATTTTGAAGTCGTGATCCCTACTCCTTCCACTTCCATTATGAAAGCTCCACCAAAATCCTTCGGCGTTTACTCGGTGCAAACGTGTGCGTTGGCCTTTTCCTTTCGATTCGGAGTCCAGCGTCCTGCACTTAGCTGCTTTATAGCTCCCGGATCTCGATATTTTCTGGCTAAGAATGACGATCGCAAGCGTTTATCCCAAGGAGAGGAGTAGGGGTAAGAACAAACATGTTCTTGAAGAGAAAACTCCTTTGCTACCCAGCTCTTTGGAGGCAAATGGATCTTTTGATGAATTTAGCGGGGCTTCATTTTCTGGCGCCGTGTTCAATCTCTCTACCACAATTGTGGGAGCGGGAATCATGTCTCTGCCAGCCACCATGAAAGTCCTGGGTTTAGTTCCTGGGATTGGTATGATTATCTTCTTTGCTTTCCTTACTGAAGCTTCGATTGAGCTGTTGATCAGATTCAGTCGGGTTGGAAAGTCGGTTTCTTATGGCGCTGTCATGTGTGATTCCTTTGGGAAATCTGGGAAGATGCTGCTCCAAATTTGTGTGGTTGTTAACAATGTTGGAGTTATGGTTGTTTATATGATTATAATAGGTGATGTGCTCTCTGGAACAACTTCTGGTAGTGTTCATCACTCAGGTGTCTTGGAAGAATGGTTTGGAGAGCATTGGTGGACAGGTCGTTTCTTTCTTCTTCTTGTCTCCACCCTTCTAATATTTGCTCCCTTGGCAAGGTTTAAACGTGTGGATTCATTAAGATATACATCTGCATTATCTGTTGCTCTCGCAGTAGTTTTTGTAGTCATCACAGCTGGCATTGCTGTTGTCAAATTGCTAGATGGAAGCATACTGATGCCAAAGTTATTTCCTGATATACCCAACCTTGCATCTATCTTGAACCTATTCACTGCAGTTCCAGTTCTTGTAACAGCTTTTATATGTCATTACAATGTTCATAGTATTGACAATGAACTTGAGGACTCGTCCAAGATGAAGCCTATCGTGAGGACATCCTTAGCGCTCTGTTCCGCTGTCTATGTAACTACAAGCTTCTTTGGCTATCTTCTTTTTGGAGAATCAGCTCTTCATGATGTTCTTGCCAACTTCGATACCAACCTTGGCATACCTTACAGTTCCATTCTTAGTGATGTTGTTCGAGTCAGCTATGCTGCACACCTTATGCTCGTTTTTCCTATAATATTTCATGCTCTGAGGCTCAACATAGACGGCCTCCTCTTTTCCAATGCAAGGCCTTTATCTACTGACAAGTGGAGGTTCAGCGGGATTTCAGCAGTGCTTCTTGCCCTCATTTTCTTGGTTGCAAACTTCATACCTAGCATATGGGTTGCCTTCCAAGTTACAGGTGCAACGGCTGCTGTTTGCATTGGGTATATCTTTCCTGCTGCGATGACACTTAGGGATCCTCATGGTATCGGAACATGGAGAGACAAATTTCTGTCTGTCTTAATGATTGTGCTTGCTGTGCTATCCAATGGAGTAGCCATATACAGTGATGCGTCCTCCCTCTTCAACAATGCCAATGCCACAGCCTAAGCACATTCTTTGATATCCTTTCATCTTCATTTTGCCTTAAGAAAGCTAAGTTCTTTTGCTAAATAGAGGTTCTGAAGCCCGAAATGGATGCCTGTATTTTCGTTTCCTTAAATAGAGGTTCTAAATCATTGTTGAGTTTCAGAGAATCTGCACTAAGGTGGTTTCAGATTGTCAAACGAATGTCATGTGCCTAGAGCTTGACACATCGTCTCAAAAGACTTTTATGGGTCAGTTTTTGGGATTGTTGATAAATACCACATTTTTTATTTTCATACTTAACATAAGATATAAATGTCTTCAATAGAGTTTATTATATCTAGAACAAATAACATAAAATGAATTCTATTATATAATATTTTTATTAAGGTATTTGCCGGCAAACTACTATTATATATAGAGAGAGAGAGACAAACAACACCAATGCCACAAAACCAGTTTTCTTATATACAAATGTAATTTAATATTTTGAAAATATAATGTTAAATACAAAAGTAAAAAAGAAGGTTGTGGTATGTATGCAAAATTCTTTATTCTTTATATGCTTGGCACTAATCTTAAAGCTTGATCAATGGATTTAAAGTGCTTGTTAAAATTTGGCTAGAATTTCAATGTGTGAAATGTACTATAATAGTTTTGATAGAAACAGGGAGATAATATTTTTCAAAGGTTTTTTTCTTACTGTTTATTTGACTGCAAAGCTTAACATTGTTATTAATATTCATAGAAAACTATGTATTAATGTTATGCAAAGTATTCGAGATTTCTTTTGCAGTGTTTGGAAAATGGGCTGCTTTTACTTGTTGGAAACCTTACAAGCTTCAAAATAGCTCGTGAACTTGTACTGCATGTAAATCCAGTTGGTTGAAATCATTCAAGTTAGCTCAAATTTTGTGCTGTTAAAAGGCAATGGATATAGATGGATGATTGTCATTTTTGATAAATCATACTAGGTTTTGAGTTGATATATGAAATGCTGTTCTTGGCTGAAATCTGAGATCCTGATCGCACGATCATTCTCGCGGTCGATAGTTTGAGCTTGACATAAGTCGAGTGTCAATGGTAATAAAGCATTAATTGTTACATTATCATGACTTGTGTATTTTCATCTATTGCTTTATTCTTGAGGTAGTTTCCTAATTAAAGCAAAGCATCTCCATGCTTGGCCAATGGATGCATAGTATGCTCAAACTGCACATTATAAATGCCTCTTTAAGGCATGGAAGAGTGGCTTTTTTTGCCCGAATTCTGATGTTTTATATTTTTCGCAAAATCTCAAGTAAAATTGGCACTAAATTTTTCTATGATTTGTGTTTTTTTTTTTT

Network for GWHGAAEX015323

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01490.17	Aa_trans	43	439	7.90E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14207	SLC38A2, SNAT2	Protein digestion and absorption	map04974
		Glutamatergic synapse	map04724
		GABAergic synapse	map04727

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.490
SRP064423	SRR2545915	Juvenile tuber	14.930
SRP108465	SRR5643513	five period of Gastrodia elata	21.580
	SRR5643514	five period of Gastrodia elata	22.420
	SRR5643515	five period of Gastrodia elata	23.310
	SRR5643524	five period of Gastrodia elata	20.410
	SRR5643525	five period of Gastrodia elata	34.320
	SRR5643528	five period of Gastrodia elata	28.290
	SRR5643658	five period of Gastrodia elata	36.670
	SRR5643659	five period of Gastrodia elata	21.840
	SRR5643660	five period of Gastrodia elata	20.160
	SRR5643661	five period of Gastrodia elata	20.130
	SRR5643662	five period of Gastrodia elata	19.950
	SRR5643663	five period of Gastrodia elata	25.670
	SRR5643664	five period of Gastrodia elata	18.160
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.720
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.150
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.210
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	28.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	29.460
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	24.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.910
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.730
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	24.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	30.240
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	30.240
SRP279888	Gastro	Gastrodia elata tuber	37.78
	Juven	Juvenile tuber	39.75
	Mother_Gastro	Mother tuber of Gastrodia elata	46.89
	Mother_Juven	Mother tuber of Juvenile	46.96