Gene detail

Detail information of GWHGAAEX015324/evm.TU.scaffold_65.113_evm.TU.scaffold_65.114

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|189502232\|ref\|YP_001957949.1\|	3.00E-08	hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2]
KOG	KOG0167	0	FOG: Armadillo/beta-catenin-like repeats
nr	gi\|743861699\|ref\|XP_010943351.1\|	0	PREDICTED: putative U-box domain-containing protein 42 [Elaeis guineensis]
Swissprot	tr\|Q9CAA7\|PUB42_ARATH	0	Putative U-box domain-containing protein 42
trEMBL	tr\|A0A061EAX1\|A0A061EAX1_THECC	0	Armadillo/beta-catenin-like repeat family protein, putative {ECO:0000313\|EMBL:EOY01552.1}
TAIR	AT1G68940	0	Armadillo/beta-catenin-like repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000063	4054075	4060816	+

Transcript Sequence
>GWHTAAEX015324 AAAGCTTAGAAATAAGTGAGAAATTCTTGAGCCGTTCTTTCTTGTTCTTGCACGATACTTTACGTGTGAGCCGCCAAACCCATTAATTAAAGCTCGGGATTGCTCAGCATAACTGAAAGGACCTCAATACCTGCTCTGGGGCGGACCTCTTAACCGAGCCTGCAAGCCGACTATTTTTTAAGAAGAAATGCCATGATTTATCAGCAGAAGTCAGAACTGTTCGTAAATTTAACGCTGAAGAAGCGAATTATCAGAGGTTCAACCCGCTGATGTCTCTCACAAAAGATGAAGTTCCATTAGTAATTCTCATTGGGCAGCTACTTGATTCAATATCAGAGGTACTATCACTAGTAGAATCAATAGAAACTGAGCATGAAATTTTCATGGAAGTAGGGTGCTACCTACATCGAGCTTCTCCAATCATTATGGAATTACAAACTGAAAGCACCACAAAGAATCTGATCGGCATTCTATACTCTTTGACTACAAATGTGGATAGTGCCAAACAACTCATCAAAATATTTAGTACTAATGCAAAAGCAGTCATGAGCACTGACCTCAAAAGCATCATTGAACAACTTGAGAGCACTTTAAACAGCATAGGAAGTGACCTAAGTTCAATTCCATCATCAGCAATAAAAAACAATTATACAGAACTAGTCATTCAATCCGTCTCAAGGGACATGAGAAATGTGCACCTTCAAATCGACAAAGCTCAGCATTATAAGGTGAATGAGCCAAACCAATATAATATATTTACAGAGGTCATCAAAGAAGGGGAAGGAAAGAGAATAGAAGCACCTGTAAGACGAAAATATCAAAGGACATTAAGTTCCTACAGCAGTGACACTCCTCGTCTAGCAGATTTTCTAAAGGGAGTGTACTACGGGTCGCAATTGGATGAAATTCAGTTGCTTGCGATACAGGCAGGTTTGGCAGAATATATTGACCCTCTTTATGATACCTTCTTCTGTCCGCTGACAAAAAAAATCATGGAGGACCCAGTGACCTTAGAGAGTGGAGTGACATATGAAAGGAGTGCTATAAATGAGTGGTTTGAGAAGCTTAAACACGAGGAGGAGCTAGTTTGTCCAACAACACAAATGAAATTGCGGAGTAGAACATTGAGCACCAATCTGGCATTAAAGACTACAATAAAGGAATGGGCAGAACGAAATGAAGCAACAAGGTTAAGAGGTGCACACACAGCATTGTCGCTAGCACTCTCAGAGGCAATGGTGCTTGATGCAGTCAGAGATCTTCAAGTCCTCTGCCGAAAGGGATATAAGAAGGAATACATGCACAATGTTGGCATTACAGAGTTGCTCGCCAACTTTCTTGCGCATAGAGATAAGAAAGTGAGATCTGAGACATTGGGTCTTCTGCAGTTATTAGCTGAAGATGATAAAGGAAAGGAAATCATAGTGAAGACTGGAGCCATTGCAGAGTCAGTCAAGATGCTATCAAGCTATAGTTCTTCTGAAAGGCAAGCATCTGTCTCATTCTTATTAGAACTTTCGAAATCCAAGGCACCATGTGAGAACATTGGAGCTGCAACTGGCTGCATCTTTATGCTAATCACAATGAAAAACAAGTCTGACGATCCTTTAGTTTCTGAAGAAGCAGGAGCAACTTTAAAAAATCTGGAGAAATGCCCAAAGAATATCAAATGCATGGCAGAAAATGGCTTTCTACAACCCCTCTTGAATAACCTTATTGATGGTTCAGAGGAAACACAGGCAGAAATGGCTACATACCTCAATGATCTTGTTCTCAGACTTGACATACAAACACACACAACCGAAAAATTATCTAAAGATCTGATACAAATAGCTAATGGCAGCAACAACTTGATCAGGAAAGCAGCATTGAAGGCTCTAGTTCTCATCTCATCATTCGAAACAAACAGTAAAACTCTCATTGAAGCTGGTATTATTCAGGTCACAACGGAGAAGATGTTCACTAGCATGGATTCCAAAGAAGATTTGGCAGCTATCCTCGGCAATGTCCTCCATTCTGGCATAAACCCAGAATTAATTCAGGTGAATAAGCATGGGCATACAATGACCTCAGAATTTTTCATCTGCAACATCATTAGTATGATTCAGTTTTCTATGCCATATGAGCTGAACATGAACCTCTTCAAAGTGTTGGCATACTTATCAAACATACCAAAAATATTTTCAAGAGTGGTATCAGTAATAAAAGAGACTAAAGCTATTCAAACAGTCATTCCATTCCTTAATTCTCAACATGATGAACTTGCCATTGCTGCCACTGAGCTGCTTATCAAGCTCTCGTCCAACATTGGTCACGCAATTGCGGAGGAGCTTTGCAAAACCCAAGGACAGCCAGAGAGCTTAATTGGGATCTTCGACATCAGCCGAATCCAAATTAACAAAAAGCATGCAATGTACTTGAACCTACTAGCAAAACTCCCTCACCAGAACCTTGCCCTCAATCTAACTCTACTCCACGATGGCGCAGTTCCTATTATGCTTGAAAGAATAAGCATAATCCAAAGAGGCGAGGCCCTGTCCAGTAGTTGGACTAGGTGTTACCTCGAAGGATTAGTGGGAACTCTTGTGAGATTCACCAGCACTCTGTATATGATTGACATCCTGCATATGGCAATGCAGCAGAATGTGACATCAGTACTAACTGGTCTAATTCAGAGCAATGCTGGGAGTGAGGAAGTTCAAAGGTTGGCAGCATTGGGCCTTGAAAAGCTGTCAGCAGAGTCCATAAACCTAACAATTAAGCACCCTGAGATGACAAAATCTATGAGAGGAATAAAATTCTTTTTCAAATGCTTCAGTATGAAACAAAAACCGAGTGGGGATGCAAGAGTAAAGCTTCAGGTCTGCCCAGTTCATAAAGGGGATTGCTCCTCCTCAGACACTTTTTGTCTGCTCGAAGCAAAGGCAGTTCAAGGGCTTGTGAGTTGTTTAGAGAGTGGAAGCCGGGGAGTGGTGGAAGCTGCTTTGGGAGCCATAAGTACTTTGTTGGATGATAGGGTGGATCTGGAGGGAAGTGTGAGAAAATTATCAGAGGTGGATGCAGTGCAGAAAATTATGGGAGTGTTAAGGGAGCATCAGGAAGGGAGTATTTGGGAGAAGACTTTGTGGGTGATTGAGAGGTTTCTGGTATGGGGAGGGGAAAGGTCAGTTAATGACATATCTAAAGAGAGAATTCTTCCGAGGGCATTGGTGAGTGCTTTCCATCACGAAGATGGGAGGACCAGAGAAGTTGCTGAAAGGATCATGAGAAAACTCAACCAGATTCAAGCTTCTTCTTAG

Network for GWHGAAEX015324

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04564.14	U-box	231	304	2.40E-16

Protein Sequence

>GWHPAAEX015324
MSLTKDEVPLVILIGQLLDSISEVLSLVESIETEHEIFMEVGCYLHRASPIIMELQTESTTKNLIGILYSLTTNVDSAKQLIKIFSTNAKAVMSTDLKSIIEQLESTLNSIGSDLSSIPSSAIKNNYTELVIQSVSRDMRNVHLQIDKAQHYKVNEPNQYNIFTEVIKEGEGKRIEAPVRRKYQRTLSSYSSDTPRLADFLKGVYYGSQLDEIQLLAIQAGLAEYIDPLYDTFFCPLTKKIMEDPVTLESGVTYERSAINEWFEKLKHEEELVCPTTQMKLRSRTLSTNLALKTTIKEWAERNEATRLRGAHTALSLALSEAMVLDAVRDLQVLCRKGYKKEYMHNVGITELLANFLAHRDKKVRSETLGLLQLLAEDDKGKEIIVKTGAIAESVKMLSSYSSSERQASVSFLLELSKSKAPCENIGAATGCIFMLITMKNKSDDPLVSEEAGATLKNLEKCPKNIKCMAENGFLQPLLNNLIDGSEETQAEMATYLNDLVLRLDIQTHTTEKLSKDLIQIANGSNNLIRKAALKALVLISSFETNSKTLIEAGIIQVTTEKMFTSMDSKEDLAAILGNVLHSGINPELIQVNKHGHTMTSEFFICNIISMIQFSMPYELNMNLFKVLAYLSNIPKIFSRVVSVIKETKAIQTVIPFLNSQHDELAIAATELLIKLSSNIGHAIAEELCKTQGQPESLIGIFDISRIQINKKHAMYLNLLAKLPHQNLALNLTLLHDGAVPIMLERISIIQRGEALSSSWTRCYLEGLVGTLVRFTSTLYMIDILHMAMQQNVTSVLTGLIQSNAGSEEVQRLAALGLEKLSAESINLTIKHPEMTKSMRGIKFFFKCFSMKQKPSGDARVKLQVCPVHKGDCSSSDTFCLLEAKAVQGLVSCLESGSRGVVEAALGAISTLLDDRVDLEGSVRKLSEVDAVQKIMGVLREHQEGSIWEKTLWVIERFLVWGGERSVNDISKERILPRALVSAFHHEDGRTREVAERIMRKLNQIQASS

Gene family

Gene family	subfamily
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016567	Biological Process	protein ubiquitination
GO:0005515	Molecular Function	protein binding
GO:0004842	Molecular Function	ubiquitin-protein transferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.400
SRP064423	SRR2545915	Juvenile tuber	14.250
SRP108465	SRR5643513	five period of Gastrodia elata	8.120
	SRR5643514	five period of Gastrodia elata	6.580
	SRR5643515	five period of Gastrodia elata	8.210
	SRR5643524	five period of Gastrodia elata	6.310
	SRR5643525	five period of Gastrodia elata	15.060
	SRR5643528	five period of Gastrodia elata	11.490
	SRR5643658	five period of Gastrodia elata	13.180
	SRR5643659	five period of Gastrodia elata	7.890
	SRR5643660	five period of Gastrodia elata	8.230
	SRR5643661	five period of Gastrodia elata	7.380
	SRR5643662	five period of Gastrodia elata	11.270
	SRR5643663	five period of Gastrodia elata	9.440
	SRR5643664	five period of Gastrodia elata	17.740
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.960
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.360
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.100
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.140
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.410
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.640
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.000
SRP279888	Gastro	Gastrodia elata tuber	10.72
	Juven	Juvenile tuber	7.44
	Mother_Gastro	Mother tuber of Gastrodia elata	19.00
	Mother_Juven	Mother tuber of Juvenile	15.32