Gene detail

Detail information of GWHGAAEX015325/evm.TU.scaffold_65.116

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743861705\|ref\|XP_010943352.1\|	7.11E-107	PREDICTED: transcription factor bHLH49 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9C670\|BH076_ARATH	2.00E-54	Transcription factor bHLH76
trEMBL	tr\|F6HGF5\|F6HGF5_VITVI	1.00E-87	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51156.1}
TAIR	AT1G26260	8.00E-54	cryptochrome-interacting basic-helix-loop-helix 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000063	4083105	4086291	-

Transcript Sequence
>GWHTAAEX015325 ATTTCAAGCTTTGTCCCTGTTTTCTTTCACTGTCTCTCTCTATTCTGTAATTGGAGGAGCTCTGCACTGTCTGAAAGTGAGTGCAGCAGCTCAGATAAGAGAGAGCTGCTCTCTTCAGCTCAACTCTTTACTTCTAAGCACTTTCAATGAAGGGAACAAAGGCATCAATCGAGCGCAGAGATTTAGAAGAATAAACAAATCTCCCACTCCTTAAAATATAAATTCAGAAAATCAGAGGAGAGGATATATTCCCATTAAAAAGAGGTACTTTTATCTGTTATGTTAGGCGTTTCCTTGCACTGACTCAAGTGTGAGTGAGCTCTGAAACCAATGCATTGTTCCTTTTTAATGGATAATAGCTGAGAGCCCGAAGCCTAGGTTTAAGATTCTCCCGTTTGCCCTATTTTCTTACAATCCTTGCTTTTAAGGAGAATAATCCTATTGATGTTCTTAGCGGTAAAGCTGAGATCTTCCTTCACCCTATTTGTGCGTGAATGAAGCTTTATCCTGGATAGATTTGGTTTGTTGAATCAGTAGTCCTTCTTCTTCTTCTATTAGAATCTTGGAGTGAGATAGATAGTAGATGGATTTGGGTGAGAAGGAGAAGAGGGCTATAGATTCTTTAAACCTAGCCTCAGCAGAATGGAATCAGACTTCCATGGTGGATTCTTTCATATGGAATCAGCCTATGTGCTGGAATCCATCAGATTCTCTTTCAAAGGGAGGCATGTTCTTGAGCGCAGGGCAGGGGCTCTCCCAATTCCCCTGTGACACCGGATTCACTGAGAAAGCCTCAAGGATCTCTTCCTTGAATAGATCTGCTCTTGTTGATCCCGTTAAGGAGAAAAGGGAGAAGGCTGGCATTGATTTCTCGGAACCGGAGTTCAGTGAGGATGGCCGAGAAGAATCGCCTAACTCATCCGTGTTTGGCTCAAATAAAAGGAAGAGAAGTTGTCAGATTCTGGAGTTGGATCGAGGGCAAGCTACTCTTCAATTGCCTTTAGAGATTGCTAAGGAAGAAAAGAACAGCACAGAGATGGAAAATGCTCCGAAGGAAGATTATATCCATGTTAGAGCTCGTCGTGGTCAAGCTACTAACAGCCACAGTCTTGCCGAAAGAGTGAGAAGGGAGAAGATTAGTGAAAGAATGAAGTTTCTTCAAGATCTTGTTCCTGGTTGCAGTAAAGTTACAGGTAAGGCTGTAATGCTGGATGAAATAATCAACTACGTCCAGTCACTGCAGCGTCAAGTGGAGTTTTTATCAATGAAGCTTGCTGCTGTCAACCCAAGTACAGACTTCAACATTGAAAGCATTATTTCCAAAGATGTACGAGATAATATCTCATCATGGGTTGCGGACAATTCTAGTTTTAATGGAGAAAAATTCAAAGTCTATGTGACAAATTCTCTTTTTCTTCTTATTTTTGGTTCATTTCAGTTATTTCAGAACAGGTTTGGCTCTTCTTCTGCCGTTGGATTCGCACCAGAAATGATCCGCCAACAGTTGCAGCGTCCACCTCATCAAGGTTTGATTCAAGTGGGAATTCCTGGAGTTATGAACCCTTCCGATGCATTTAGAAGAGCATTAAATGTTCAATTGCCTTCAGGCAGTGAGTACAAAGAAGCTGCACAGCAAGTTTGTAATGAATGGGATGAAGTTCTCCACAATGTTGTTCAAATGACCTATGGTAACAATCCTCCTCACAAAACCCAAGATTTGAATGGCGTGCCTCGTGACAGTTTTCCATTGTGAGGCAAAATGAAGGTCTTTCCCTAAATTCTTACCTCCAAAACTCCAGTGAATGTCTACTCCTTTGTATCTGAAGCAGATGATACAGGAAACAGTTGCAGAGTTATTGGATATCTTCTTTAAGAGTTCAGTGGAAGAATCCACACATATTTTTTATATAATTTAATAGCATATTCAGAGTGATTGATAGATCTGTTTGCTTCTAATGTTGAAGATAAGAGGCGGCCATTCGATTAGAAGAAAGTGCCACTACTCGGTGCTTTATTCATAAAAGCTTGGTAAGAAGAGAGTGCTGGATAATGTGTAAGATGATGGAACTTGGCTATTTGGAAATCTAGCAGCTGGGTAAATTGTTAAATAAAGCTTTCAATTTATGGTTTGTTTTATTTATTTCCTCAATAAATTCGGAGGAATTGAATGGTCCATACTTGCAGTTTTAGTGACCTAAGTGAAATAATATAATTCTTTTATTTGATTGCTTTTTATTTTCC

Network for GWHGAAEX015325

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.25	HLH	172	220	3.10E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	Molecular Function	protein dimerization activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.500
SRP064423	SRR2545915	Juvenile tuber	14.650
SRP108465	SRR5643513	five period of Gastrodia elata	11.620
	SRR5643514	five period of Gastrodia elata	13.560
	SRR5643515	five period of Gastrodia elata	8.930
	SRR5643524	five period of Gastrodia elata	10.720
	SRR5643525	five period of Gastrodia elata	9.290
	SRR5643528	five period of Gastrodia elata	8.500
	SRR5643658	five period of Gastrodia elata	13.420
	SRR5643659	five period of Gastrodia elata	3.980
	SRR5643660	five period of Gastrodia elata	2.720
	SRR5643661	five period of Gastrodia elata	3.810
	SRR5643662	five period of Gastrodia elata	3.360
	SRR5643663	five period of Gastrodia elata	4.850
	SRR5643664	five period of Gastrodia elata	3.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.810
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.320
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.380
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.900
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.880
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.390
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.630
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.520
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.350
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.350
SRP279888	Gastro	Gastrodia elata tuber	4.88
	Juven	Juvenile tuber	10.97
	Mother_Gastro	Mother tuber of Gastrodia elata	3.76
	Mother_Juven	Mother tuber of Juvenile	2.30