Detail information of GWHGAAEX015327/evm.TU.scaffold_65.118


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|219851431|ref|YP_002465863.1|4.00E-28proteasome beta-type subunit [Methanosphaerula palustris E1-9c]
KOGKOG01731.00E-16120S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1
nrgi|743759093|ref|XP_010930290.1|6.40E-176PREDICTED: proteasome subunit beta type-7-B [Elaeis guineensis]
Swissprottr|O23710|PSB7A_ARATH1.00E-162Proteasome subunit beta type-7-A (Precursor)
trEMBLtr|M0U1Y8|M0U1Y8_MUSAM4.00E-176Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}
TAIRAT5G405801.00E-16120S proteasome beta subunit PBB2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006341582094175080+
Transcript Sequence

Network for GWHGAAEX015327

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00227.25Proteasome402201.10E-47
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02739PSMB7 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0051603Biological Processproteolysis involved in cellular protein catabolic process
GO:0004298Molecular Functionthreonine-type endopeptidase activity
GO:0004175Molecular Functionendopeptidase activity
GO:0005839Cellular Componentproteasome core complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms100.750
SRR2545915Juvenile tuber108.580
SRP108465SRR5643513five period of Gastrodia elata138.690
SRR5643514five period of Gastrodia elata160.560
SRR5643515five period of Gastrodia elata139.110
SRR5643524five period of Gastrodia elata154.710
SRR5643525five period of Gastrodia elata136.420
SRR5643528five period of Gastrodia elata158.750
SRR5643658five period of Gastrodia elata151.640
SRR5643659five period of Gastrodia elata101.580
SRR5643660five period of Gastrodia elata89.620
SRR5643661five period of Gastrodia elata90.630
SRR5643662five period of Gastrodia elata88.050
SRR5643663five period of Gastrodia elata88.660
SRR5643664five period of Gastrodia elata84.510
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1111.170
SRR6049655Rhizomagastrodiae_C368-T10_good_178.750
SRR6049656Rhizomagastrodiae_C368-T07_good_1127.180
SRR6049657Rhizomagastrodiae_C368-T07_good_194.790
SRR6049658Rhizomagastrodiae_C368-T04_good_186.880
SRR6049659Rhizomagastrodiae_C368-T04_good_182.970
SRR6049660Rhizomagastrodiae_C368-T01_good_190.320
SRR6049661Rhizomagastrodiae_C368-T04_good_195.600
SRR6049662Rhizomagastrodiae_C368-T01_good_1135.310
SRR6049663Rhizomagastrodiae_C368-T01_good_1103.020
SRR6049664Rhizomagastrodiae_C368-T10_good_1168.730
SRR6049665Rhizomagastrodiae_C368-T10_good_1168.730
SRP279888GastroGastrodia elata tuber 101.97
JuvenJuvenile tuber105.35
Mother_GastroMother tuber of Gastrodia elata 90.69
Mother_JuvenMother tuber of Juvenile 85.62