Gene detail

Detail information of GWHGAAEX015332/evm.TU.scaffold_65.128

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|374312694\|ref\|YP_005059124.1\|	3.00E-06	Curculin domain-containing protein (mannose-binding) lectin [Granulicella mallensis MP5ACTX8]
nr	gi\|743889796\|ref\|XP_010910930.1\|	4.19E-23	PREDICTED: mannose-specific lectin-like [Elaeis guineensis]
Swissprot	tr\|B2KNH9\|LEC_DENFN	5.00E-24	Mannose-specific lectin (Precursor)
trEMBL	tr\|W1PKA3\|W1PKA3_AMBTC	2.00E-21	Uncharacterized protein {ECO:0000313\|EMBL:ERN08086.1}
trEMBL	tr\|W1PKA3\|W1PKA3_AMBTC	1.00E-16	Uncharacterized protein {ECO:0000313\|EMBL:ERN08086.1}

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000063	4324349	4374977	-

Transcript Sequence
>GWHTAAEX015332 ATGGCGGCAGCAACCCCTCTCCTTTTCAATGCGGCCATCATAGTCTTGGTCCTTGCAGCAATGCCCTCGACTTGGGGGGACGCCTTATCCACCTCCAACATCCTAGAATCCGGTAACAAACTATACACCGGCGAATACCTCTCAATCGGAGATTATAAGCTCATCTTGCAGCCCGATTGCAACTTTGTCCTTTACTATGATAAAACTCCTAAGTGGGCAACTGGAACCGAAGCATTGGGCAAAAACTGTTCTTTCTTGTTGACGGGGTACAGCGAACTCATACTATATTCCGAGAACCAGCGGATACTGTGGAGAACCGAGACGATCAGCTCTTATGGCAAATATGCCCTCGTCTTAAAGCCAGATGCTGAGGGAAATCCATGTTTTATAAATACAGAGGAGAATGCTTTTATTGAAAGTAATACTGCTCTTTTTATTTTGCCCGAGGGAAATGAAAATAATAATATTTTTAGAAATGATATCACTTCTACCCCTCCAAATGAGAATTTGGATAACACTGATGCCACTACCACCTTTGCTGATCATTATTACAATGAAAATGATAGTTTACATATCGACAATAATTTGTTTTTTACTGACAATGCTAATGCAGCTCTTGCTAAAATTGCTACTAGTTTATTTGCCCCTGATGCTGATCCCGGAAATGTTATTTTCTCTGAAAACTATTTAGACATTAATAATGCTGAGCTTACTTCTAATGTTTTGGCTATCTCAGAGGAAAACACATCAATGTCTGCTAATAATTTATGTGATGTGGCTACTATAAATGATAGAAATATTGTTATATGTATTAATGATGATCATTGTAATGCTAATGTTAAACTTGGAGAGAATATCCCAAATTTTGAAACTGAGCAAAACATTAATCTCATAGCTGGAAATAATGAGGATGAGATTAATGTTGCTGATGCCATGCAGGAAGATAACATGTACAATGCAGGTATTGCTAATGAAATTTTTGCTGATGGAAATTGCCTAGCTAAAAGCGTTGATAATGTTGAAACCGTAAGAGTTATTGTTTCTTCTGTTTCCTGGCTGTTCTATATTGATTTGGGCACTACTGATAGTTTTGTGGTGGTCATGGTGCTTGCAGCAATGCCCTCCTCTGTTTGGGCAGACTGCAACGTCCTGGAATCCGGTGAAAAACTTGAAACGGACCAAGCTCTCGCAATTGATGACTATCGGTTGGTCATGCAGAAAGATTGCAACCTTGTTCTGTACAAAGGCCGGACACCCTACTGGGCAACCATAACCATAAACAAGGGCACAAATTGTTATCTCGAATTGATGGGCAACGGAGAGCTCTTCCTGTATTCGGGTGATCAGGTCATACTGTGGAGGACCGAGATTGCCGGCGAGCCTGGCACATACGCCCTCATCCTAAAGCCAAATGGCAACCTCATTGTCTTCAGTAGGCCGACGTGGGCTACTGGTACAACCAATATCGCAGAGCCGAGACGCTAA

Network for GWHGAAEX015332

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01453.23	B_lectin	43	119	4.70E-10
PF01453.23	B_lectin	391	455	1.10E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.460
SRP064423	SRR2545915	Juvenile tuber	0.000
SRP108465	SRR5643513	five period of Gastrodia elata	53.240
	SRR5643514	five period of Gastrodia elata	55.520
	SRR5643515	five period of Gastrodia elata	36.080
	SRR5643524	five period of Gastrodia elata	28.820
	SRR5643525	five period of Gastrodia elata	0.000
	SRR5643528	five period of Gastrodia elata	0.170
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	0.140
	SRR5643660	five period of Gastrodia elata	0.100
	SRR5643661	five period of Gastrodia elata	0.050
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.040
	SRR5643664	five period of Gastrodia elata	0.230
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	24.380
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	61.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.100
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	29.790
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.280
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.530
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.350
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.470
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	60.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	60.050
SRP279888	Gastro	Gastrodia elata tuber	0.03
	Juven	Juvenile tuber	0.01
	Mother_Gastro	Mother tuber of Gastrodia elata	0.35
	Mother_Juven	Mother tuber of Juvenile	0.08