Detail information of GWHGAAEX015337/evm.TU.scaffold_65.139
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0483 | 2.00E-62 | Transcription factor HEX, contains HOX and HALZ domains |
| nr | gi|743809438|ref|XP_010928608.1| | 2.27E-92 | PREDICTED: homeobox-leucine zipper protein HOX16-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q6YWR4|HOX16_ORYSJ | 8.00E-68 | Homeobox-leucine zipper protein HOX16 |
| trEMBL | tr|I1IE89|I1IE89_BRADI | 3.00E-78 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI3G56180.1} |
| TAIR | AT3G01470 | 2.00E-62 | homeobox 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000063 | 4668627 | 4676882 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015337
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00046.28 | Homeobox | 68 | 121 | 1.00E-17 |
| PF02183.17 | HALZ | 123 | 164 | 1.90E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB-HD-ZIP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 48.810 |
| SRR2545915 | Juvenile tuber | 9.940 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 120.700 |
| SRR5643514 | five period of Gastrodia elata | 86.910 | |
| SRR5643515 | five period of Gastrodia elata | 88.250 | |
| SRR5643524 | five period of Gastrodia elata | 72.970 | |
| SRR5643525 | five period of Gastrodia elata | 98.900 | |
| SRR5643528 | five period of Gastrodia elata | 73.230 | |
| SRR5643658 | five period of Gastrodia elata | 101.840 | |
| SRR5643659 | five period of Gastrodia elata | 59.240 | |
| SRR5643660 | five period of Gastrodia elata | 68.390 | |
| SRR5643661 | five period of Gastrodia elata | 60.170 | |
| SRR5643662 | five period of Gastrodia elata | 59.340 | |
| SRR5643663 | five period of Gastrodia elata | 78.500 | |
| SRR5643664 | five period of Gastrodia elata | 57.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 104.350 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 89.240 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 98.930 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 134.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 167.660 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 193.390 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 130.280 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 131.140 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 92.650 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 112.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 95.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 95.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 67.81 |
| Juven | Juvenile tuber | 85.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 336.98 | |
| Mother_Juven | Mother tuber of Juvenile | 159.49 |