Detail information of GWHGAAEX015345/evm.TU.scaffold_66.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383454866|ref|YP_005368855.1| | 2.00E-84 | ATP-dependent helicase [Corallococcus coralloides DSM 2259] |
| KOG | KOG0922 | 0 | DEAH-box RNA helicase |
| nr | gi|743773987|ref|XP_010917349.1| | 0 | PREDICTED: putative ATP-dependent RNA helicase DHX33 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q38953|DHX8_ARATH | 5.00E-146 | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase |
| trEMBL | tr|M0SVU0|M0SVU0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P05110_001} |
| TAIR | AT1G26370 | 0 | RNA helicase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000073 | 65409 | 105234 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015345
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00271.30 | Helicase_C | 116 | 246 | 2.90E-13 |
| PF04408.22 | HA2 | 307 | 396 | 7.80E-17 |
| PF07717.15 | OB_NTP_bind | 470 | 533 | 1.40E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12818 | DHX8, PRP22 | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0004386 | Molecular Function | helicase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 53.460 |
| SRR2545915 | Juvenile tuber | 49.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 32.650 |
| SRR5643514 | five period of Gastrodia elata | 30.930 | |
| SRR5643515 | five period of Gastrodia elata | 30.540 | |
| SRR5643524 | five period of Gastrodia elata | 27.050 | |
| SRR5643525 | five period of Gastrodia elata | 39.150 | |
| SRR5643528 | five period of Gastrodia elata | 33.590 | |
| SRR5643658 | five period of Gastrodia elata | 43.210 | |
| SRR5643659 | five period of Gastrodia elata | 30.060 | |
| SRR5643660 | five period of Gastrodia elata | 27.900 | |
| SRR5643661 | five period of Gastrodia elata | 24.040 | |
| SRR5643662 | five period of Gastrodia elata | 23.790 | |
| SRR5643663 | five period of Gastrodia elata | 25.690 | |
| SRR5643664 | five period of Gastrodia elata | 22.400 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 49.360 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 51.250 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 62.360 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 74.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 83.460 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 67.930 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 73.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 43.850 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 43.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.590 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.590 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 31.12 |
| Juven | Juvenile tuber | 21.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 25.25 | |
| Mother_Juven | Mother tuber of Juvenile | 20.49 |