Detail information of GWHGAAEX015347/evm.TU.scaffold_66.6
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|672157145|ref|XP_008798269.1| | 0 | PREDICTED: auxin response factor 15-like isoform X3 [Phoenix dactylifera] |
| Swissprot | tr|Q0JKI9|ARFB_ORYSJ | 1.00E-177 | Auxin response factor 2 |
| trEMBL | tr|A0A061GE40|A0A061GE40_THECC | 0 | Auxin response factor {ECO:0000256|RuleBase:RU004561} |
| TAIR | AT2G33860 | 5.00E-159 | Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000073 | 274358 | 370499 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015347
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02362.20 | B3 | 136 | 237 | 4.70E-22 |
| PF06507.12 | Auxin_resp | 264 | 344 | 6.50E-32 |
| PF03094.14 | Mlo | 804 | 1073 | 2.80E-94 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | B3-ARF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14486 | K14486, ARF | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006952 | Biological Process | defense response |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009725 | Biological Process | response to hormone |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 124.170 |
| SRR2545915 | Juvenile tuber | 100.430 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 91.320 |
| SRR5643514 | five period of Gastrodia elata | 71.200 | |
| SRR5643515 | five period of Gastrodia elata | 77.490 | |
| SRR5643524 | five period of Gastrodia elata | 76.940 | |
| SRR5643525 | five period of Gastrodia elata | 48.130 | |
| SRR5643528 | five period of Gastrodia elata | 26.800 | |
| SRR5643658 | five period of Gastrodia elata | 51.120 | |
| SRR5643659 | five period of Gastrodia elata | 82.510 | |
| SRR5643660 | five period of Gastrodia elata | 105.080 | |
| SRR5643661 | five period of Gastrodia elata | 88.560 | |
| SRR5643662 | five period of Gastrodia elata | 97.780 | |
| SRR5643663 | five period of Gastrodia elata | 96.290 | |
| SRR5643664 | five period of Gastrodia elata | 137.660 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 131.010 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 81.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 94.500 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 174.580 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 173.900 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 206.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 166.600 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 139.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 78.310 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 105.250 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 66.930 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 66.930 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 158.02 |
| Juven | Juvenile tuber | 111.26 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 64.24 | |
| Mother_Juven | Mother tuber of Juvenile | 83.39 |