Detail information of GWHGAAEX015351/evm.TU.scaffold_66.15
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|269839716|ref|YP_003324408.1| | 2.00E-56 | glycoside hydrolase family protein [Thermobaculum terrenum ATCC BAA-798] |
| nr | gi|695028268|ref|XP_009401505.1| | 0 | PREDICTED: mannan endo-1,4-beta-mannosidase 6-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q0DCM5|MAN6_ORYSJ | 0 | Mannan endo-1,4-beta-mannosidase 6 (Precursor) |
| trEMBL | tr|F2DZE0|F2DZE0_HORVD | 0 | Predicted protein {ECO:0000313|EMBL:BAK00462.1} |
| TAIR | AT4G28320 | 5.00E-145 | Glycosyl hydrolase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000073 | 725666 | 748014 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015351
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00150.17 | Cellulase | 58 | 378 | 1.20E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K19355 | MAN | Metabolic pathways | map01100 |
| Fructose and mannose metabolism | map00051 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.230 |
| SRR2545915 | Juvenile tuber | 16.020 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.290 |
| SRR5643514 | five period of Gastrodia elata | 14.240 | |
| SRR5643515 | five period of Gastrodia elata | 19.760 | |
| SRR5643524 | five period of Gastrodia elata | 13.510 | |
| SRR5643525 | five period of Gastrodia elata | 19.470 | |
| SRR5643528 | five period of Gastrodia elata | 18.440 | |
| SRR5643658 | five period of Gastrodia elata | 20.520 | |
| SRR5643659 | five period of Gastrodia elata | 23.610 | |
| SRR5643660 | five period of Gastrodia elata | 22.100 | |
| SRR5643661 | five period of Gastrodia elata | 23.720 | |
| SRR5643662 | five period of Gastrodia elata | 18.250 | |
| SRR5643663 | five period of Gastrodia elata | 26.500 | |
| SRR5643664 | five period of Gastrodia elata | 21.530 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.660 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.510 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.360 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.370 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.970 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.620 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.36 |
| Juven | Juvenile tuber | 22.28 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.86 | |
| Mother_Juven | Mother tuber of Juvenile | 14.77 |