Detail information of GWHGAAEX015356/evm.TU.scaffold_66.20


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|182679664|ref|YP_001833810.1|0succinate dehydrogenase flavoprotein subunit [Beijerinckia indica subsp. indica ATCC 9039]
KOGKOG24030Succinate dehydrogenase, flavoprotein subunit
nrgi|743761551|ref|XP_010942839.1|0PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [Elaeis guineensis]
Swissprottr|Q6ZDY8|SDHA_ORYSJ0Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (Precursor)
trEMBLtr|K4A765|K4A765_SETIT0Uncharacterized protein {ECO:0000313|EnsemblPlants:Si034721m}
TAIRAT5G667600succinate dehydrogenase 1-1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000073883219897760+
Transcript Sequence

Network for GWHGAAEX015356

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00890.23FAD_binding_2474437.70E-124
PF02910.19Succ_DH_flav_C4986301.70E-42
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00234SDHA, SDH1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Citrate cycle (TCA cycle)map00020
Oxidative phosphorylationmap00190
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0022900Biological Processelectron transport chain
GO:0006099Biological Processtricarboxylic acid cycle
GO:0055114Biological Processoxidation-reduction process
GO:0016627Molecular Functionoxidoreductase activity, acting on the CH-CH group of donors
GO:0016491Molecular Functionoxidoreductase activity
GO:0050660Molecular Functionflavin adenine dinucleotide binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms68.220
SRR2545915Juvenile tuber81.780
SRP108465SRR5643513five period of Gastrodia elata100.020
SRR5643514five period of Gastrodia elata120.890
SRR5643515five period of Gastrodia elata95.330
SRR5643524five period of Gastrodia elata117.790
SRR5643525five period of Gastrodia elata106.630
SRR5643528five period of Gastrodia elata141.460
SRR5643658five period of Gastrodia elata132.030
SRR5643659five period of Gastrodia elata80.870
SRR5643660five period of Gastrodia elata74.150
SRR5643661five period of Gastrodia elata76.490
SRR5643662five period of Gastrodia elata74.590
SRR5643663five period of Gastrodia elata83.790
SRR5643664five period of Gastrodia elata71.180
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1103.900
SRR6049655Rhizomagastrodiae_C368-T10_good_193.830
SRR6049656Rhizomagastrodiae_C368-T07_good_1114.500
SRR6049657Rhizomagastrodiae_C368-T07_good_196.190
SRR6049658Rhizomagastrodiae_C368-T04_good_193.560
SRR6049659Rhizomagastrodiae_C368-T04_good_190.200
SRR6049660Rhizomagastrodiae_C368-T01_good_188.390
SRR6049661Rhizomagastrodiae_C368-T04_good_190.390
SRR6049662Rhizomagastrodiae_C368-T01_good_1131.530
SRR6049663Rhizomagastrodiae_C368-T01_good_1116.120
SRR6049664Rhizomagastrodiae_C368-T10_good_1147.110
SRR6049665Rhizomagastrodiae_C368-T10_good_1147.110
SRP279888GastroGastrodia elata tuber 59.97
JuvenJuvenile tuber83.82
Mother_GastroMother tuber of Gastrodia elata 85.03
Mother_JuvenMother tuber of Juvenile 85.17