Detail information of GWHGAAEX015360/evm.TU.scaffold_66.28


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|220915274|ref|YP_002490578.1|5.00E-104glycogen/starch synthase [Anaeromyxobacter dehalogenans 2CP-1]
nrgi|672119856|ref|XP_008783179.1|0PREDICTED: soluble starch synthase 1, chloroplastic/amyloplastic isoform X2 [Phoenix dactylifera]
Swissprottr|Q0DEC8|SSY1_ORYSJ0Soluble starch synthase 1, chloroplastic/amyloplastic (Precursor)
trEMBLtr|Q8GV54|Q8GV54_COLES0Starch synthase, chloroplastic/amyloplastic {ECO:0000256|RuleBase:RU361232}
TAIRAT5G243000Glycogen/starch synthases, ADP-glucose type

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007311810131218842+
Transcript Sequence

Network for GWHGAAEX015360

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08323.10Glyco_transf_51133694.00E-65
PF00534.19Glycos_transf_14255792.20E-16
Protein Sequence

Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT5

KEGG pathway

KO Enzyme pathway mapID
K00703glgA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500
Biofilm formation - Escherichia colimap02026

Gene Ontology

GO term OntologyName
GO:0032259Biological Processmethylation
GO:0008168Molecular Functionmethyltransferase activity
GO:0004373Molecular Functionglycogen (starch) synthase activity
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms31.170
SRR2545915Juvenile tuber15.440
SRP108465SRR5643513five period of Gastrodia elata21.510
SRR5643514five period of Gastrodia elata22.000
SRR5643515five period of Gastrodia elata16.800
SRR5643524five period of Gastrodia elata19.000
SRR5643525five period of Gastrodia elata22.380
SRR5643528five period of Gastrodia elata22.110
SRR5643658five period of Gastrodia elata25.220
SRR5643659five period of Gastrodia elata4.280
SRR5643660five period of Gastrodia elata4.990
SRR5643661five period of Gastrodia elata6.090
SRR5643662five period of Gastrodia elata21.960
SRR5643663five period of Gastrodia elata9.500
SRR5643664five period of Gastrodia elata11.720
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.440
SRR6049655Rhizomagastrodiae_C368-T10_good_119.670
SRR6049656Rhizomagastrodiae_C368-T07_good_119.910
SRR6049657Rhizomagastrodiae_C368-T07_good_125.260
SRR6049658Rhizomagastrodiae_C368-T04_good_125.330
SRR6049659Rhizomagastrodiae_C368-T04_good_124.190
SRR6049660Rhizomagastrodiae_C368-T01_good_123.850
SRR6049661Rhizomagastrodiae_C368-T04_good_122.120
SRR6049662Rhizomagastrodiae_C368-T01_good_126.190
SRR6049663Rhizomagastrodiae_C368-T01_good_126.570
SRR6049664Rhizomagastrodiae_C368-T10_good_128.720
SRR6049665Rhizomagastrodiae_C368-T10_good_128.720
SRP279888GastroGastrodia elata tuber 14.30
JuvenJuvenile tuber16.08
Mother_GastroMother tuber of Gastrodia elata 26.53
Mother_JuvenMother tuber of Juvenile 37.30