Detail information of GWHGAAEX015369/evm.TU.scaffold_66.37
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743755569|ref|XP_010912181.1| | 0 | PREDICTED: auxin response factor 11 isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q5NB85|ARFA_ORYSJ | 0 | Auxin response factor 1 |
| trEMBL | tr|A0A067K091|A0A067K091_JATCU | 0 | Auxin response factor {ECO:0000256|RuleBase:RU004561} |
| TAIR | AT4G23980 | 0 | auxin response factor 9 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000073 | 1345938 | 1350206 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015369
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02362.20 | B3 | 111 | 211 | 1.40E-20 |
| PF06507.12 | Auxin_resp | 237 | 315 | 1.20E-30 |
| PF02309.15 | AUX_IAA | 556 | 594 | 1.10E-05 |
| PF02309.15 | AUX_IAA | 600 | 645 | 2.80E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | B3-ARF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14486 | K14486, ARF | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009725 | Biological Process | response to hormone |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005515 | Molecular Function | protein binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 38.320 |
| SRR2545915 | Juvenile tuber | 56.230 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 33.780 |
| SRR5643514 | five period of Gastrodia elata | 31.390 | |
| SRR5643515 | five period of Gastrodia elata | 33.240 | |
| SRR5643524 | five period of Gastrodia elata | 30.120 | |
| SRR5643525 | five period of Gastrodia elata | 16.770 | |
| SRR5643528 | five period of Gastrodia elata | 8.490 | |
| SRR5643658 | five period of Gastrodia elata | 13.380 | |
| SRR5643659 | five period of Gastrodia elata | 50.450 | |
| SRR5643660 | five period of Gastrodia elata | 58.040 | |
| SRR5643661 | five period of Gastrodia elata | 50.720 | |
| SRR5643662 | five period of Gastrodia elata | 59.870 | |
| SRR5643663 | five period of Gastrodia elata | 65.780 | |
| SRR5643664 | five period of Gastrodia elata | 92.150 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 49.950 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 39.280 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 39.270 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 43.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 41.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 40.270 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 49.590 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 39.700 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 35.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 53.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 41.230 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 41.230 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 60.74 |
| Juven | Juvenile tuber | 88.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 47.90 | |
| Mother_Juven | Mother tuber of Juvenile | 41.11 |