Detail information of GWHGAAEX015378/evm.TU.scaffold_66.49


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|302348560|ref|YP_003816198.1|1.00E-13single-strand DNA-binding protein [Acidilobus saccharovorans 345-15]
nrgi|672107413|ref|XP_008809884.1|3.69E-85PREDICTED: uncharacterized protein At4g28440-like [Phoenix dactylifera]
Swissprottr|O49453|Y4844_ARATH1.00E-60Uncharacterized protein At4g28440
trEMBLtr|M0SBD9|M0SBD9_MUSAM7.00E-80Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P03210_001}
TAIRAT1G237501.00E-65Nucleic acid-binding, OB-fold-like protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007316217021642665-
Transcript Sequence

Network for GWHGAAEX015378

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K07466RFA1, RPA1, rpa DNA replication map03030
Nucleotide excision repairmap03420
Mismatch repairmap03430
Homologous recombinationmap03440
Fanconi anemia pathwaymap03460

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms67.990
SRR2545915Juvenile tuber85.720
SRP108465SRR5643513five period of Gastrodia elata150.510
SRR5643514five period of Gastrodia elata180.970
SRR5643515five period of Gastrodia elata160.090
SRR5643524five period of Gastrodia elata187.810
SRR5643525five period of Gastrodia elata167.740
SRR5643528five period of Gastrodia elata136.030
SRR5643658five period of Gastrodia elata122.020
SRR5643659five period of Gastrodia elata121.130
SRR5643660five period of Gastrodia elata118.790
SRR5643661five period of Gastrodia elata127.320
SRR5643662five period of Gastrodia elata134.260
SRR5643663five period of Gastrodia elata114.540
SRR5643664five period of Gastrodia elata147.170
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1129.970
SRR6049655Rhizomagastrodiae_C368-T10_good_1102.870
SRR6049656Rhizomagastrodiae_C368-T07_good_1143.660
SRR6049657Rhizomagastrodiae_C368-T07_good_1130.950
SRR6049658Rhizomagastrodiae_C368-T04_good_1144.590
SRR6049659Rhizomagastrodiae_C368-T04_good_1152.300
SRR6049660Rhizomagastrodiae_C368-T01_good_1142.070
SRR6049661Rhizomagastrodiae_C368-T04_good_1142.400
SRR6049662Rhizomagastrodiae_C368-T01_good_1158.450
SRR6049663Rhizomagastrodiae_C368-T01_good_1165.250
SRR6049664Rhizomagastrodiae_C368-T10_good_1162.470
SRR6049665Rhizomagastrodiae_C368-T10_good_1162.470
SRP279888GastroGastrodia elata tuber 152.13
JuvenJuvenile tuber151.26
Mother_GastroMother tuber of Gastrodia elata 138.84
Mother_JuvenMother tuber of Juvenile 124.11